View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_12 (Length: 446)

Name: NF5786_low_12
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_12
NF5786_low_12
[»] chr6 (2 HSPs)
chr6 (59-429)||(12345031-12345400)
chr6 (8-62)||(12345423-12345475)
[»] chr3 (2 HSPs)
chr3 (59-429)||(17605845-17606215)
chr3 (10-55)||(17606245-17606290)
[»] chr5 (2 HSPs)
chr5 (8-429)||(235730-236143)
chr5 (8-429)||(236427-236842)
[»] chr4 (1 HSPs)
chr4 (85-429)||(53733308-53733647)
[»] chr7 (1 HSPs)
chr7 (85-276)||(5930708-5930901)
[»] chr2 (1 HSPs)
chr2 (95-345)||(15086604-15086849)
[»] chr1 (2 HSPs)
chr1 (169-274)||(48561443-48561548)
chr1 (264-375)||(48561568-48561681)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 59 - 429
Target Start/End: Complemental strand, 12345400 - 12345031
Alignment:
Q  59 aatttcctccaattccaccaaagtactttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattcc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  12345400 aatttcctccaattccaccaaagtactttgctgtaatttcttccgctgccacacatccttttagtttataactcatacaatttcaggaataatttattcc 12345301  T
Q  159 aaattgatgaaaacaattgtaaatggagaggaaggaattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaag 258  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  12345300 aaattgatgaaaacaattgtaaatg-agaggaaggtattgaatccaagattgacaattgcgtttttgaaattttatttcaatttcataactatccttaag 12345202  T
Q  259 taatagaattcccaaattcataccctaaaatatattgagatggagaagaagacataatttttatttggaacattgatcgatggtagagaggggaaatctg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12345201 taatagaattcccaaattcataccctaaaatatattgagatggagaagaagacataatttttatttggaacattgatcgatggtagagaggggaaatctg 12345102  T
Q  359 accgacaacaataagaaagaggagagagataacaaagaacacttaagctaaaaatggtgtgatgcaaaaat 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12345101 accgacaacaataagaaagaggagagagataacaaagaacacttaagctaaaaatggtgtgatgcaaaaat 12345031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 12345475 - 12345423
Alignment:
Q  8 ccttcaattatttatgttacaatcatatggttccagagacaatttattgccaatt 62  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  12345475 ccttcaattattt--gttacaatcatatggttccagagacaatttattgccaatt 12345423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 59 - 429
Target Start/End: Complemental strand, 17606215 - 17605845
Alignment:
Q  59 aatttcctccaattccaccaaagtactttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattcc 158  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17606215 aatttcctccaattccaccaaaataatttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggatgatttattcc 17606116  T
Q  159 aaattgatgaaaacaattgtaaatggagaggaaggaattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaag 258  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  17606115 aaattgatgaaaacaattgtaaatggagtggaaggtattgaatccaagattgacaattgagtttttgaaattttataccaatttcataacaatccataag 17606016  T
Q  259 taatagaattcccaaattcataccctaaaatatattgagatggagaagaagacataatttttatttggaacattgatcgatggtagagaggggaaatctg 358  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17606015 taatagaattcccaaattcataccttaaaacatattgagatggagaagaagacataatttttatttggaacattgatcgatggtagagaggggaaatctg 17605916  T
Q  359 accgacaacaataagaaagaggagagagataacaaagaacacttaagctaaaaatggtgtgatgcaaaaat 429  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  17605915 accgacaataataagaaagaggggagagataacaaagaacacttaagctaaaaatggtgtgatgcgaaaat 17605845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 17606290 - 17606245
Alignment:
Q  10 ttcaattatttatgttacaatcatatggttccagagacaatttatt 55  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  17606290 ttcaattatttatgttacaatcataaggttctagagacaatttatt 17606245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 236143 - 235730
Alignment:
Q  8 ccttcaattatttatgttacaatcatatggttccagagacaatttattgccaatt--tcctccaattccaccaaagtactttgctgtaatttcttccgct 105  Q
    ||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||  |  |||||||          | |||| ||||||||| ||||||    
T  236143 ccttcaattctttatgttacaatcatacggttccaaagataatttattgccaattaatgttccaatt----------aatttggtgtaatttcctccgct 236054  T
Q  106 gccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagaggaaggaattgaatccaa 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  236053 gccacacatcctcttaatttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagaagaaggtattgaatccaa 235954  T
Q  206 gattgacaattgagtttttgaaattttattccaatttcataactatccttaagtaatagaattcccaaattcataccctaaaatatattgagatggagaa 305  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  235953 gaatgacaattgagtttttgaaattttattccaatttcataactatccctaagtaatagaattcccaaattcataccctaaaatatattgagatggagaa 235854  T
Q  306 gaagacataatttttatttggaacattgatcgatggtagagaggggaaatctgaccgacaacaataagaaagaggagagagataacaaagaacacttaag 405  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  235853 gaagacataatttttatttagaacattgatcgatggtagagaggggaaatctgaccgacaacaataagaaagaggagagagataacaaaaaacacttaag 235754  T
Q  406 ctaaaaatggtgtgatgcaaaaat 429  Q
    ||||||||||||||||||||||||    
T  235753 ctaaaaatggtgtgatgcaaaaat 235730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 236427 - 236842
Alignment:
Q  8 ccttcaattatttatgttacaatcatatggttccagagacaatttattgccaatt--tcctccaattccaccaaagtactttgctgtaatttcttccgct 105  Q
    ||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||  |  |||||||          | |||| ||||||||| ||||||    
T  236427 ccttcaattctttatgttacaatcatacggttccaaagataatttattgccaattaatgttccaatt----------aatttggtgtaatttcctccgct 236516  T
Q  106 gccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagaggaaggaattgaatccaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  236517 gccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatggagtggaaggtattgaatccaa 236616  T
Q  206 gattgacaattgagtttttgaaattttattccaatttcataactatccttaagtaatagaattcccaaattcataccctaaaatatattgagatggagaa 305  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  236617 gaatgacaattgagtttttgaaattttattccaatttcataactatccctaagtaatagaattcccaaattcataccctaaaatatattgagatggagaa 236716  T
Q  306 gaagacataatttttatttggaacattgatcgatggtagagaggggaaatctgaccgacaacaataagaaagag--gagagagataacaaagaacactta 403  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  236717 gaagacataatttttatttagaacattgatcgatggtagagaggggaaatctgaccgacaacaataagaaagaggagagagagataacaaagaacactta 236816  T
Q  404 agctaaaaatggtgtgatgcaaaaat 429  Q
    ||||||||||||||||||||||||||    
T  236817 agctaaaaatggtgtgatgcaaaaat 236842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 85 - 429
Target Start/End: Original strand, 53733308 - 53733647
Alignment:
Q  85 tttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataatttattccaaattgatgaaaacaattgtaaatgg 184  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||    
T  53733308 tttggtgtaatttcttccgctgccacacatcctcttagtttatagctcatacag-------gataatttattccaaattgatgaaaacaattgtaaatgg 53733400  T
Q  185 agaggaaggaattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagtaatagaattcccaaattcataccct 284  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53733401 agaagaaggtattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccctaagtaatagaattcccaaattcataccct 53733500  T
Q  285 aaaatatattgagatggagaagaagacataatttttatttggaacattgatcgatggtagagaggggaaatctgaccgacaacaataagaaagag--gag 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  53733501 aaaatatattgagatggagaagaagacataatttttatttggaacattgatcgatggtagagaggggaaatctgaccgacaacaataagaaagaggagag 53733600  T
Q  383 agagataacaaagaacacttaagctaaaaatggtgtgatgcaaaaat 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  53733601 agagataacaaagaacacttaagctaaaaatggtgtgatgcaaaaat 53733647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 5930708 - 5930901
Alignment:
Q  85 tttgctgtaatttcttccgctgccacacatcctcttagtttataactcatacagtttcagggataattt--attccaaattgatgaaaacaattgtaaat 182  Q
    |||| |||||||||||||||| || |||| ||| || |||||| ||||||||||||| ||||| || ||  |||||||||| |||||||||||||||||     
T  5930708 tttggtgtaatttcttccgctaccgcacacccttttggtttattactcatacagttttagggacaacttctattccaaattaatgaaaacaattgtaaac 5930807  T
Q  183 ggagaggaaggaattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagtaatagaattcccaaatt 276  Q
     ||||||| || ||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||  |||||||| |||||||||||||    
T  5930808 agagaggatggtattaaatccaagattgacaattgagtttctgaaattttatttcaatttcataattatcgctaagtaattgaattcccaaatt 5930901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 95 - 345
Target Start/End: Complemental strand, 15086849 - 15086604
Alignment:
Q  95 tttcttccgctgccacacatcctcttagtttataactcatacag-tttcagggataatttattccaaattgatgaaaacaattgtaaatggagaggaagg 193  Q
    ||||||||||| ||||||| | | || ||| || |||||||| | ||||||||| ||||||||||||||| ||||||||||| | |||| |             
T  15086849 tttcttccgctaccacacaccgtattggttcattactcatacgggtttcagggacaatttattccaaattaatgaaaacaatggcaaatag--------- 15086759  T
Q  194 aattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagta------atagaattcccaaattcataccctaaa 287  Q
       |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||  | ||||      ||||||||||||| |||| ||||||||    
T  15086758 ---tgaatccaagattggcaattgagtttctgtaattttattccaatttcataattatcactgagtataaaaaatagaattcccaatttcaaaccctaaa 15086662  T
Q  288 atatattgagatggagaagaagacataatttttatttggaacattgatcgatggtaga 345  Q
    || |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15086661 atgtattgagatggagaagaagacataatttttatttggaacaatgaccgatggtaga 15086604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 48561443 - 48561548
Alignment:
Q  169 aaacaattgtaaatggagaggaaggaattgaatccaagattgacaattgagtttttgaaattttattccaatttcataactatccttaagtaatagaatt 268  Q
    ||||||| | ||||||||||||||  |||||||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  48561443 aaacaatgggaaatggagaggaagctattgaatccaagattgacaaatgagattctgaaattttattccaatttcataattatccttaagtaatagaatt 48561542  T
Q  269 cccaaa 274  Q
    ||||||    
T  48561543 cccaaa 48561548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 48561568 - 48561681
Alignment:
Q  264 gaattcccaaattcataccctaaaatatat--tgagatggagaagaagacataatttttatttggaacattgatcgatggtagagaggggaaatctgacc 361  Q
    |||||| |||||||| ||||||||||||||  |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48561568 gaattctcaaattcaaaccctaaaatatatattgagttcgagaagaagacctaatttttatttggaacattgatcgatggtagagaggggaaatctgaac 48561667  T
Q  362 gacaacaataagaa 375  Q
     |||| ||||||||    
T  48561668 aacaataataagaa 48561681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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