View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5786_low_16 (Length: 417)
Name: NF5786_low_16
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 15453895 - 15454222
Alignment:
| Q |
10 |
caaagggtaattttggttggttttgttaaccaattttaatgaagctctatgactaatcttgtaaaattagttgtattgttttattttttgtaaagggaga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15453895 |
caaagggtaattttggttggttttgttaaccaattttaatgaagctctatgactaatcttgtaaaattagttgtattgttttattttttgtaaagggaga |
15453994 |
T |
|
| Q |
110 |
ctataattacacatgaaagagggtctaaattgaaaattttcacttttaaaggcttaagaataaaattcattatttaattactctttttcttaaccatttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15453995 |
ctataattacacatgaaagagggtctaaattgaaaattttcacttttaaaggcttaagaataaaattcattatttaattactctttttcttaaccatttg |
15454094 |
T |
|
| Q |
210 |
attcttaatgnnnnnnncgctttaaaagtttagagtttgcccaaaaggtagctaaagtcgagttaaaaactgtttctatcaaaattgaattcattgcttc |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15454095 |
attcttaatgaaaaaaacgctttaaaagtttagagtttgcccaaaaggtagctaaagtcgagttaaaaactgtttctatcaaaattgaattcattgcttc |
15454194 |
T |
|
| Q |
310 |
ttatgaaacatggacacatatttggaca |
337 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
15454195 |
ttatgaaacatggacacatatctggaca |
15454222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University