View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_17 (Length: 412)
Name: NF5786_low_17
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 8336704 - 8336321
Alignment:
| Q |
1 |
acatcaacaaatctaatatcataatcaggaagggagcctttaacagttgcgagcccctgctgtaacatgttattgtattgtgttgctaacccattctcaa |
100 |
Q |
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| T |
8336704 |
acatcaacaaatctaatatcataatcaggaagggagcctttaacagttgcaagcccctgctgtaacatgttattgtattgtgctgctaacccattctcaa |
8336605 |
T |
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| Q |
101 |
aatctacacaaacccttaatggtcctcccattgtagatctagctgcaggtaagcaccctaatggaagtgtacttagaacccacacatgtcgtgctcccaa |
200 |
Q |
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| T |
8336604 |
aatctacacaaacccttaatggtcctcccattgtagatctagctgcaggtaagcaccctaatggaagtgtacttagaacccacacatgtcgtgctcccaa |
8336505 |
T |
|
| Q |
201 |
ttgatatagactctataattaggattaacaatcaaagttaattaatatgaaagaattaattttggattgataaatacagagaaagaaagaaacaaacctt |
300 |
Q |
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| T |
8336504 |
ttgatatagactctataattaggattaacaatcaaagttaattaatatgaaagaattaattttggat---------gagagatacaaagaaacaaacctt |
8336414 |
T |
|
| Q |
301 |
gaggaaattttggccggcagaaactaacatattggaatatacattgaaaggcaagaagtgccttggagtaaaggaataagcgaatgcaacatc |
393 |
Q |
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| T |
8336413 |
gaggaaattttggccggcagaaactaacatattggaatatacattgaaaggcaagaagtgccttggagtaaaggaataagcgaatgcaacatc |
8336321 |
T |
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