View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_2 (Length: 633)
Name: NF5786_low_2
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 32856456 - 32857074
Alignment:
| Q |
1 |
cctaacttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856456 |
cctaacttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattagga |
32856555 |
T |
|
| Q |
101 |
tcaaccattccttggttgggattaaataatacatagtctaaagatatttgattagggttattcttataagcaaaataaggataagcattgacccaaaagg |
200 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856556 |
tcaaccattccttggttaggattaaataatacatagtctaaagatatttgattagggtcattcttataagcaaaataaggataagcattgacccaaaagg |
32856655 |
T |
|
| Q |
201 |
gcgattttgtttttgacaaaaagttcaaaaattccttcatgatttcagagatttcacttctgaaactaccagctgaaggagggtaagattcttcaagaac |
300 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856656 |
gtgattttgtttttgacaaaaagttcaaaaattccttcatgatttcagagatttcacttctgaaactaccagctgaaggagggtaagattcttcaagaac |
32856755 |
T |
|
| Q |
301 |
ttctaatgaactaggtgttgacacatgaatgtttgtgtccaaacctaattgaactagagcattgtaaatgttgataactgctggaacaagatattgaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32856756 |
ttctaatgaactaggtgttgacacatgaatgtttgtgttcaaacctaattgaactagagcattgtaaatgttgatcactgctggaacaagatattgaatt |
32856855 |
T |
|
| Q |
401 |
agggttgtgtcgagttctgtgaaaacttcattccctaattgaatgccagtgatctttgtgtctggaagatatggtttgatattggtatttacccattgaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856856 |
agggttgtgtcgagttctgtgaaaacttcattccctacttgaattccagtgatctttgtgtctggaagatatggtttgatattggtatttacccattgaa |
32856955 |
T |
|
| Q |
501 |
gtgcttgttgtggatcatttaattggtttagtatttgattttcaattgttacgatgatttccacgtttgaattggcgaaagctttaagaatctgtggatt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856956 |
gtgcttgttgtggatcatttaattggtttagtatttgattttcaattgttacgatgatttccacgtttgaattggcgaaagctttaagaatctgtggatt |
32857055 |
T |
|
| Q |
601 |
cgtatcgtagattcttgtt |
619 |
Q |
| |
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||||||||||||||||||| |
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| T |
32857056 |
cgtatcgtagattcttgtt |
32857074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 19220125 - 19219997
Alignment:
| Q |
61 |
agcataaagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttgggattaaataatacatagtctaaagatatttgattagggtta |
160 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| || |||||||||| |||| || || | ||||||| |||||| |||||||| | |||||||||| |
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|
| T |
19220125 |
agcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggtta |
19220026 |
T |
|
| Q |
161 |
ttcttataagcaaaataaggataagcatt |
189 |
Q |
| |
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| ||||| |||||| |||| |||||||| |
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|
| T |
19220025 |
tctttatatgcaaaaaaagggtaagcatt |
19219997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 6292370 - 6291829
Alignment:
| Q |
1 |
cctaacttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattagga |
100 |
Q |
| |
|
||||||||| ||||| ||||| || | |||||| || | ||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
6292370 |
cctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtagga |
6292271 |
T |
|
| Q |
101 |
tcaaccattccttggttgggattaaataatacatagtctaaagatatttgattagggttattcttataagcaaaataaggataagcattgacccaaaagg |
200 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||| |||| ||| || || | || ||||| ||||| ||||| |||||||||| |||||| | |
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|
| T |
6292270 |
tcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaaag |
6292171 |
T |
|
| Q |
201 |
gcgattttgtttttgacaaaaagttcaaaaattccttcatgatttcagagatttcacttctgaaactaccagctgaaggagggtaagattcttcaagaac |
300 |
Q |
| |
|
| | ||||||| || ||| ||||||||||||| | ||| || ||||||||| | | |||||||||| |||||||||||||| || ||| | || |
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| T |
6292170 |
gtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttgaaactaccggctgaaggagggtacgaagtttccaacac |
6292071 |
T |
|
| Q |
301 |
ttctaatgaactaggtgttgacacatgaatgtttgtgtccaaacctaattgaactagagcattgtaaatgttgataactgctggaacaagatattgaatt |
400 |
Q |
| |
|
| |||| ||||| ||||| || || |||||||| | | ||||||| | ||| ||||||||| || || || || || |||||||||| ||||| |
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|
| T |
6292070 |
tgctaaagaacttggtgtagaaacccaaatgtttg---catagcctaatttagctaaagcattgtagatattaatcaccgccggaacaagatgttgaaga |
6291974 |
T |
|
| Q |
401 |
agggttgtgtcgagttctgtgaaaacttcattccctaattgaatgccagtgatctttgtgtctggaagatatggtttgatattggtatttacccattgaa |
500 |
Q |
| |
|
|| ||||| || || ||||||||||| || |||| |||||| || ||||| ||||||| || || || ||| |||| | | || |||||||||| |
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| T |
6291973 |
agagttgtatcatcgtcggtgaaaacttcgttacctacttgaattccggtgatttttgtgttaggtaggtacggtatgatgcggctgttcacccattgaa |
6291874 |
T |
|
| Q |
501 |
gtgcttgttgtggatcatttaattggtttagtatttgattttcaa |
545 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||||| |
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|
| T |
6291873 |
gtgcttgttgtggatcatctaattggtttaatatttcattttcaa |
6291829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 34869131 - 34869249
Alignment:
| Q |
68 |
agcatgttatcataatgtaaatttgtattaggatcaaccattccttggttgggattaaataatacatagtctaaagatatttgattagggttattcttat |
167 |
Q |
| |
|
||||||||||||||||| | ||||| || |||||||||||||||||||| || | ||| || ||||| ||||| |||||||| |||||||||| ||||| |
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|
| T |
34869131 |
agcatgttatcataatgcaggtttgtttttggatcaaccattccttggtttggttgaaacaaaacataatctaaggatatttgcttagggttatccttat |
34869230 |
T |
|
| Q |
168 |
aagcaaaataaggataagc |
186 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
34869231 |
aagcaaagtaaggataagc |
34869249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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