View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_21 (Length: 393)

Name: NF5786_low_21
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_21
NF5786_low_21
[»] chr1 (1 HSPs)
chr1 (16-383)||(31197757-31198103)
[»] chr6 (3 HSPs)
chr6 (16-388)||(26464014-26464382)
chr6 (307-371)||(13379112-13379176)
chr6 (275-305)||(680749-680779)
[»] scaffold0182 (1 HSPs)
scaffold0182 (307-371)||(32489-32553)
[»] chr7 (2 HSPs)
chr7 (307-371)||(21723853-21723917)
chr7 (118-206)||(37912411-37912499)
[»] chr8 (3 HSPs)
chr8 (275-305)||(20385946-20385976)
chr8 (275-305)||(30711233-30711263)
chr8 (275-305)||(30719010-30719040)
[»] chr2 (1 HSPs)
chr2 (275-305)||(44044468-44044498)
[»] chr5 (1 HSPs)
chr5 (324-371)||(26616532-26616582)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 31197757 - 31198103
Alignment:
Q  16 caagtccaaattcataagctaagaattaatggctgttgcagaagatgcttcatgnnnnnnnnnttaaattgaaccacgcggaatgacaaaaacggaaaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |  |||||||||||||||||||||||||| |||||||    
T  31197757 caagtccaaattcataagctaagaattaatggctgttgcagaagatgcttcatgaaaaaaaa-tcgaattgaaccacgcggaatgacaaaaatggaaaac 31197855  T
Q  116 ggttggcgaattcggagaggacgaagagagcacaattagcggaagaacaatttgaaggagaagacgaaaaagcggatttgagaagatgaatgtggatttg 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  31197856 ggttggcgaattcggagaggacggagagagcacaattagcggaagaacggtttgaaggagaagacaaaaaagcggatttgagaagatgaatgcggatttg 31197955  T
Q  216 agaagatgaatgcggatttgagaagatgaatggtgattgtggagnnnnnnnnaatcaggtggtttgtttatgaatgcaggaacaaaaatctagaaaattg 315  Q
    |||||||                    |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31197956 agaagat--------------------gaatggtgattgtggagttttttttaatcaggtggtttgtttatgaatgcaggaacaaaaatctagaaaattg 31198035  T
Q  316 aagatgaaaatggttgttgaagtgcacgatatgcagcagagaaagaacctccttccgttgttgttcgt 383  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||  |||||||||||    
T  31198036 aagatgaaaatggttgttgaagtggacgatatgcagcagaggaagaacctccttcaattgttgttcgt 31198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 26464014 - 26464382
Alignment:
Q  16 caagtccaaattcataagctaagaattaatggctgttgcagaagatgcttcatgnnnnnnnnnttaaa------ttgaaccacgcggaatgacaaaaacg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||      ||||||||||||||||||||||||||    
T  26464014 caagtccaaattcataagctaagaattaatggctgttgcagaagatgcttcatgaaaagaaaaaaaaaatcgaattgaaccacgcggaatgacaaaaacg 26464113  T
Q  110 gaaaacggttggcgaattcggagaggacgaagagagcacaattagcggaagaacaatttgaaggagaagacgaaaaagcggatttgagaagatgaatgtg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||    
T  26464114 gaaaacggttggcgaattcggagaggacgaagagagcacaattagcggaagaacaatttgaaggagaagacgaaaaag--------------------tg 26464193  T
Q  210 gatttgagaagatgaatgcggatttgagaagatgaatggtgattgtggagnnnnnnnn----------aatcaggtggtttgtttatgaatgcaggaaca 299  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |                  ||||||||||||||||||||||||||||||||    
T  26464194 gatttgagaaaatgaatgcggatttgagaagatgaatggtgattgtggggtttttttttttttttttaaatcaggtggtttgtttatgaatgcaggaaca 26464293  T
Q  300 aaaatctagaaaattgaagatgaaaatggttgttgaagtgcacgatatgcagcagagaaagaacctccttccgttgttgttcgtctgtg 388  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  26464294 aaaatctagaaaattgaagatgaaaatggttgttgaagtggacgatatgcagcagagaaagaacctccttccattgttgttcgtgtgtg 26464382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 13379176 - 13379112
Alignment:
Q  307 agaaaattgaagatgaaaatggttgttgaagtgcacgatatgcagcagagaaagaacctccttcc 371  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  13379176 agaaaattgaagatgaaaatggttgttgaagttgacgatatgcagtagagaaagaacctccttcc 13379112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 680749 - 680779
Alignment:
Q  275 tggtttgtttatgaatgcaggaacaaaaatc 305  Q
    |||||||||||||||||||||||||||||||    
T  680749 tggtttgtttatgaatgcaggaacaaaaatc 680779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 32489 - 32553
Alignment:
Q  307 agaaaattgaagatgaaaatggttgttgaagtgcacgatatgcagcagagaaagaacctccttcc 371  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  32489 agaaaattgaagatgaaaatggttgttgaagttgacgatatgcagcagagaaagaacctccttcc 32553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 21723853 - 21723917
Alignment:
Q  307 agaaaattgaagatgaaaatggttgttgaagtgcacgatatgcagcagagaaagaacctccttcc 371  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  21723853 agaaaattgaagatgaaaatggttgttgaagttgacgatatgcagcagagaaagaacctccttcc 21723917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 37912411 - 37912499
Alignment:
Q  118 ttggcgaattcggagaggacgaagagagcacaattagcggaagaacaatttgaaggagaagacgaaaaagcggatttgagaagatgaat 206  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||| || ||||  |||||| ||||||| ||||||||||||||||||    
T  37912411 ttggcgaattcggaaaggacaaagagagcacaattagcagaagaacgatctgaacaagaagatgaaaaagaggatttgagaagatgaat 37912499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 20385976 - 20385946
Alignment:
Q  275 tggtttgtttatgaatgcaggaacaaaaatc 305  Q
    |||||||||||||||||||||||||||||||    
T  20385976 tggtttgtttatgaatgcaggaacaaaaatc 20385946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 30711263 - 30711233
Alignment:
Q  275 tggtttgtttatgaatgcaggaacaaaaatc 305  Q
    |||||||||||||||||||||||||||||||    
T  30711263 tggtttgtttatgaatgcaggaacaaaaatc 30711233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 30719040 - 30719010
Alignment:
Q  275 tggtttgtttatgaatgcaggaacaaaaatc 305  Q
    |||||||||||||||||||||||||||||||    
T  30719040 tggtttgtttatgaatgcaggaacaaaaatc 30719010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 44044498 - 44044468
Alignment:
Q  275 tggtttgtttatgaatgcaggaacaaaaatc 305  Q
    |||||||||||||||||||||||||||||||    
T  44044498 tggtttgtttatgaatgcaggaacaaaaatc 44044468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 26616582 - 26616532
Alignment:
Q  324 aatggttgttgaagtgcacgata---tgcagcagagaaagaacctccttcc 371  Q
    |||||||||||||||| ||||||   |||||||||||||||| ||||||||    
T  26616582 aatggttgttgaagtggacgatatgctgcagcagagaaagaagctccttcc 26616532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University