View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_23 (Length: 366)
Name: NF5786_low_23
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 42849007 - 42848672
Alignment:
| Q |
12 |
agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcaca |
111 |
Q |
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| T |
42849007 |
agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaat-aagttatatccatagagaatgcaagaatagaggtttcaca |
42848909 |
T |
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| Q |
112 |
acagcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaatagagtaaatgcgttacagtggtgcttgcatctttgtgagct |
211 |
Q |
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| T |
42848908 |
acagcaatggcctgaaactcaccaaataggaaagtcaaaaatatgcagaaacagaaaatagagtaaatgtgttacagtggtgcttgcatctttgtgagct |
42848809 |
T |
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| Q |
212 |
tcagaacggccaagcatagctactagttaaatgactctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaata |
311 |
Q |
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| T |
42848808 |
tcagaacggccaagcatagctactagttaaatgactccggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcatcaaacagaata |
42848709 |
T |
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| Q |
312 |
atagtctttgaaatttacttctagtatcataaatctt |
348 |
Q |
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| T |
42848708 |
atagtctttgaaatttacttctattatcataaatctt |
42848672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 42855648 - 42855475
Alignment:
| Q |
14 |
agacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcacaac |
113 |
Q |
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| T |
42855648 |
agacacgcaatgaattgacaattcctagtaaagaagggaaagagttataagcctaatcaagttatatctttggggaatgcaagaatagaggtttcacaac |
42855549 |
T |
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| Q |
114 |
agcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaat-agagtaaatgcgttaca |
187 |
Q |
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| T |
42855548 |
agcaatggcctgaaattcacctaatgggagagtgaaaaatatgcagaaacagaaaataagagt-aatgcgttaca |
42855475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 42857164 - 42857084
Alignment:
| Q |
91 |
tgcaagaatagaggtttcacaacagcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaata |
171 |
Q |
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| T |
42857164 |
tgcaagaatagaggtttcacaacagcaatggcctgaaattcaccaaatgggagagtgaaaaatatgcagaaacagaaaata |
42857084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 348
Target Start/End: Complemental strand, 42853435 - 42853315
Alignment:
| Q |
235 |
tagttaaatgactctg--gtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtca------aacagaataatagtctttgaaatt |
326 |
Q |
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|||||||| ||||||| |||||||||| |||||||||||||||||||| | ||||| |||| || |||| |||||||| ||||||||||||||| |
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| T |
42853435 |
tagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaat-atagtctttgaaatt |
42853337 |
T |
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| Q |
327 |
tacttctagtatcataaatctt |
348 |
Q |
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||||||||| |||||| ||||| |
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| T |
42853336 |
tacttctagaatcatacatctt |
42853315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 42857227 - 42857184
Alignment:
| Q |
11 |
cagagacacgcaatgaattgacaattcctagtaaagaagggaaa |
54 |
Q |
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| T |
42857227 |
cagagactcgcaatgaattgacaattcctagtaaagaagggaaa |
42857184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 42856986 - 42856910
Alignment:
| Q |
246 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
323 |
Q |
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| T |
42856986 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42856910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 42861063 - 42860987
Alignment:
| Q |
246 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
323 |
Q |
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| T |
42861063 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42860987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 42861557 - 42861513
Alignment:
| Q |
21 |
caatgaattgacaattcctagtaaagaagggaaagaattataagc |
65 |
Q |
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| T |
42861557 |
caatgaattgtcagttcctagtaaagaagggaaatagttataagc |
42861513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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