View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_25 (Length: 336)
Name: NF5786_low_25
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 25375114 - 25374868
Alignment:
| Q |
18 |
atttcctccaccaacatgtagcaaagtgcattgcaatttgcaacaaacctcacatgattttatcacctttggcttttactcaccaattcaacaagaagca |
117 |
Q |
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| T |
25375114 |
atttcctccaccaacatgtagcaaagtgcattgcaatttgcaacaaacctcacatgattttatcaccttt------tactcaccaattcaacaaga---- |
25375025 |
T |
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| Q |
118 |
taagcattgattcacagaatgaagattctgactcttcctgcattgcttccctggatttagtaagcttctagtcatagtttgtaaaacttgctccttcact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25375024 |
----cattgattcacagaatgaagattctgactcttcctgcattccttccctggatttagtaagcttctagtcatagtttgtaaaacttgct-cttcact |
25374930 |
T |
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| Q |
218 |
ctaaactgcattatatcaactgnnnnnnnnncttttcagatggcaaatgttagcgagttatgt |
280 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25374929 |
ctaaactgcattatatcaactg-ttttttttcttttcagatggcaaatgttagcgagttatgt |
25374868 |
T |
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