View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_26 (Length: 334)

Name: NF5786_low_26
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_26
NF5786_low_26
[»] chr4 (8 HSPs)
chr4 (18-306)||(49297164-49297460)
chr4 (18-224)||(49290213-49290424)
chr4 (305-334)||(23455107-23455136)
chr4 (305-334)||(27069063-27069092)
chr4 (305-334)||(27069154-27069183)
chr4 (305-334)||(39666929-39666958)
chr4 (305-334)||(50503978-50504007)
chr4 (124-160)||(49303986-49304022)
[»] scaffold0771 (1 HSPs)
scaffold0771 (305-334)||(1073-1102)
[»] scaffold0328 (2 HSPs)
scaffold0328 (305-334)||(11293-11322)
scaffold0328 (305-334)||(11384-11413)
[»] scaffold0006 (1 HSPs)
scaffold0006 (305-334)||(222033-222062)
[»] chr8 (6 HSPs)
chr8 (305-334)||(15230084-15230113)
chr8 (305-334)||(15230175-15230204)
chr8 (305-334)||(34177216-34177245)
chr8 (305-334)||(35634343-35634372)
chr8 (305-334)||(42945267-42945296)
chr8 (305-334)||(42945358-42945387)
[»] chr7 (8 HSPs)
chr7 (305-334)||(4226278-4226307)
chr7 (305-334)||(10600193-10600222)
chr7 (305-334)||(18087584-18087613)
chr7 (305-334)||(25628631-25628660)
chr7 (305-334)||(42618064-42618093)
chr7 (305-334)||(46205553-46205582)
chr7 (306-334)||(23058674-23058702)
chr7 (306-334)||(33828219-33828247)
[»] chr6 (5 HSPs)
chr6 (305-334)||(7905487-7905516)
chr6 (305-334)||(8089596-8089625)
chr6 (305-334)||(12065373-12065402)
chr6 (305-334)||(15913792-15913821)
chr6 (305-334)||(21836183-21836212)
[»] chr5 (3 HSPs)
chr5 (305-334)||(17544201-17544230)
chr5 (305-334)||(17544292-17544321)
chr5 (305-334)||(20153071-20153100)
[»] chr3 (10 HSPs)
chr3 (305-334)||(3469353-3469382)
chr3 (305-334)||(3469444-3469473)
chr3 (305-334)||(10294804-10294833)
chr3 (305-334)||(13948933-13948962)
chr3 (305-334)||(29118691-29118720)
chr3 (305-334)||(32716402-32716431)
chr3 (305-334)||(35644004-35644033)
chr3 (305-334)||(40788573-40788602)
chr3 (305-334)||(40788664-40788693)
chr3 (305-334)||(52032291-52032320)
[»] chr2 (8 HSPs)
chr2 (305-334)||(6588836-6588865)
chr2 (305-334)||(8710621-8710650)
chr2 (305-334)||(8710712-8710741)
chr2 (305-334)||(11830517-11830546)
chr2 (305-334)||(15604492-15604521)
chr2 (305-334)||(15604583-15604612)
chr2 (305-334)||(25623441-25623470)
chr2 (305-334)||(25624351-25624380)
[»] chr1 (9 HSPs)
chr1 (305-334)||(5734162-5734191)
chr1 (305-334)||(7371443-7371472)
chr1 (305-334)||(8898670-8898699)
chr1 (305-334)||(17189107-17189136)
chr1 (305-334)||(31058301-31058330)
chr1 (305-334)||(35040858-35040887)
chr1 (305-334)||(40714597-40714626)
chr1 (305-334)||(49955500-49955529)
chr1 (305-334)||(49955591-49955620)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 49297164 - 49297460
Alignment:
Q  18 gtataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49297164 gtataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaa 49297263  T
Q  118 gtatattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaatta-----aatactacatggttccacaagt 212  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  49297264 gtctattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaattaaagggaatactacatggttccacaagt 49297363  T
Q  213 tacaacctttttgcattatgatattatattttattggtgtat---tggttttaatggaatctgatttgccgataaaaacaaaagtgttactagtaga 306  Q
    ||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49297364 tactacctttttgcattatgatattatattttattggtgtattggtggttttaatggaatctgatttgccgataaaaacaaaagtgttactagtaga 49297460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 49290213 - 49290424
Alignment:
Q  18 gtataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49290213 gtataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaa 49290312  T
Q  118 gtatattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaatta-----aatactacatggttccacaagt 212  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  49290313 gtctattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaattaaagggaatactacatggttccacaagt 49290412  T
Q  213 tacaaccttttt 224  Q
    ||| || |||||    
T  49290413 tactacattttt 49290424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 23455136 - 23455107
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  23455136 gagggtatttttgtccattcccatgccatt 23455107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 27069092 - 27069063
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  27069092 gagggtatttttgtccattcccatgccatt 27069063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 27069154 - 27069183
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  27069154 gagggtatttttgtccattcccatgccatt 27069183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 39666958 - 39666929
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  39666958 gagggtatttttgtccattcccatgccatt 39666929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 50504007 - 50503978
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  50504007 gagggtatttttgtccattcccatgccatt 50503978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 49303986 - 49304022
Alignment:
Q  124 tgtttagccttcttttttaagggttaaatgtaatgtt 160  Q
    ||||||||||||||||||  |||||||||||||||||    
T  49303986 tgtttagccttcttttttcggggttaaatgtaatgtt 49304022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 1102 - 1073
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  1102 gagggtatttttgtccattcccatgccatt 1073  T

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Target: scaffold0328 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 11322 - 11293
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  11322 gagggtatttttgtccattcccatgccatt 11293  T

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Target: scaffold0328; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 11384 - 11413
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  11384 gagggtatttttgtccattcccatgccatt 11413  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 222033 - 222062
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  222033 gagggtatttttgtccattcccatgccatt 222062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 15230113 - 15230084
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  15230113 gagggtatttttgtccattcccatgccatt 15230084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 15230175 - 15230204
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  15230175 gagggtatttttgtccattcccatgccatt 15230204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 34177216 - 34177245
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  34177216 gagggtatttttgtccattcccatgccatt 34177245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 35634343 - 35634372
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  35634343 gagggtatttttgtccattcccatgccatt 35634372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 42945296 - 42945267
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  42945296 gagggtatttttgtccattcccatgccatt 42945267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 42945358 - 42945387
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  42945358 gagggtatttttgtccattcccatgccatt 42945387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 4226307 - 4226278
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  4226307 gagggtatttttgtccattcccatgccatt 4226278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 10600193 - 10600222
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  10600193 gagggtatttttgtccattcccatgccatt 10600222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 18087584 - 18087613
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  18087584 gagggtatttttgtccattcccatgccatt 18087613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 25628660 - 25628631
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  25628660 gagggtatttttgtccattcccatgccatt 25628631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 42618093 - 42618064
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  42618093 gagggtatttttgtccattcccatgccatt 42618064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 46205553 - 46205582
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  46205553 gagggtatttttgtccattcccatgccatt 46205582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 23058674 - 23058702
Alignment:
Q  306 agggtatttttgtccattcccatgccatt 334  Q
    |||||||||||||||||||||||||||||    
T  23058674 agggtatttttgtccattcccatgccatt 23058702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 33828219 - 33828247
Alignment:
Q  306 agggtatttttgtccattcccatgccatt 334  Q
    |||||||||||||||||||||||||||||    
T  33828219 agggtatttttgtccattcccatgccatt 33828247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 7905487 - 7905516
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  7905487 gagggtatttttgtccattcccatgccatt 7905516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 8089625 - 8089596
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  8089625 gagggtatttttgtccattcccatgccatt 8089596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 12065402 - 12065373
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  12065402 gagggtatttttgtccattcccatgccatt 12065373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 15913792 - 15913821
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  15913792 gagggtatttttgtccattcccatgccatt 15913821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 21836212 - 21836183
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  21836212 gagggtatttttgtccattcccatgccatt 21836183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 17544230 - 17544201
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  17544230 gagggtatttttgtccattcccatgccatt 17544201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 17544292 - 17544321
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  17544292 gagggtatttttgtccattcccatgccatt 17544321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 20153100 - 20153071
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  20153100 gagggtatttttgtccattcccatgccatt 20153071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 3469382 - 3469353
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  3469382 gagggtatttttgtccattcccatgccatt 3469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 3469444 - 3469473
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  3469444 gagggtatttttgtccattcccatgccatt 3469473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 10294804 - 10294833
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  10294804 gagggtatttttgtccattcccatgccatt 10294833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 13948962 - 13948933
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  13948962 gagggtatttttgtccattcccatgccatt 13948933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 29118720 - 29118691
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  29118720 gagggtatttttgtccattcccatgccatt 29118691  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 32716431 - 32716402
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  32716431 gagggtatttttgtccattcccatgccatt 32716402  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 35644033 - 35644004
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  35644033 gagggtatttttgtccattcccatgccatt 35644004  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 40788602 - 40788573
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  40788602 gagggtatttttgtccattcccatgccatt 40788573  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 40788664 - 40788693
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  40788664 gagggtatttttgtccattcccatgccatt 40788693  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 52032320 - 52032291
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  52032320 gagggtatttttgtccattcccatgccatt 52032291  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 6588865 - 6588836
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  6588865 gagggtatttttgtccattcccatgccatt 6588836  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 8710650 - 8710621
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  8710650 gagggtatttttgtccattcccatgccatt 8710621  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 8710712 - 8710741
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  8710712 gagggtatttttgtccattcccatgccatt 8710741  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 11830546 - 11830517
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  11830546 gagggtatttttgtccattcccatgccatt 11830517  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 15604521 - 15604492
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  15604521 gagggtatttttgtccattcccatgccatt 15604492  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 15604583 - 15604612
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  15604583 gagggtatttttgtccattcccatgccatt 15604612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 25623470 - 25623441
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  25623470 gagggtatttttgtccattcccatgccatt 25623441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 25624351 - 25624380
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  25624351 gagggtatttttgtccattcccatgccatt 25624380  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 5734191 - 5734162
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  5734191 gagggtatttttgtccattcccatgccatt 5734162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 7371472 - 7371443
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  7371472 gagggtatttttgtccattcccatgccatt 7371443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 8898699 - 8898670
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  8898699 gagggtatttttgtccattcccatgccatt 8898670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 17189136 - 17189107
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  17189136 gagggtatttttgtccattcccatgccatt 17189107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 31058301 - 31058330
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  31058301 gagggtatttttgtccattcccatgccatt 31058330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 35040858 - 35040887
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  35040858 gagggtatttttgtccattcccatgccatt 35040887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 40714626 - 40714597
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  40714626 gagggtatttttgtccattcccatgccatt 40714597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 49955529 - 49955500
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  49955529 gagggtatttttgtccattcccatgccatt 49955500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 49955591 - 49955620
Alignment:
Q  305 gagggtatttttgtccattcccatgccatt 334  Q
    ||||||||||||||||||||||||||||||    
T  49955591 gagggtatttttgtccattcccatgccatt 49955620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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