View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_28 (Length: 320)
Name: NF5786_low_28
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 135880 - 136107
Alignment:
| Q |
18 |
tgatcttttcatcatctactaggtcacattgcattatccttatattatgattttcataaaaggtgtgtttgattctaatttcctctatcattactgttgt |
117 |
Q |
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| T |
135880 |
tgatcttttcatcatctactaggtcacattgcattatccttatattatgattttcataaaaggtgtgtttgattctaatttcctctatcattactgttgt |
135979 |
T |
|
| Q |
118 |
agatggaatgtgtaaatctcagacacaagaactagcttcagccaaaagaaatatgtggaggcattgagtcgggaagacttttatttactcaaagaatgtt |
217 |
Q |
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| T |
135980 |
agatggaatgtgcaaatctcagacacaaggactagcttcagccataagaaatatgtggaggcattgagtcgggaagacttttatttactcaaagaatgtt |
136079 |
T |
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| Q |
218 |
cgtggctcttgagcagaggttattgaca |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
136080 |
cgtggctcttgagcagaggttattgaca |
136107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 137029 - 137088
Alignment:
| Q |
251 |
cactaaaagtcatgttttaatctcacattccttttatattgagggttaccatttattcat |
310 |
Q |
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| T |
137029 |
cactaaaagtcatgttttaatctcacattccttttatattgagggttaccatttattcat |
137088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 157844 - 157909
Alignment:
| Q |
243 |
acatgattcactaaaagtcatgttttaatctca-cattccttttatattgagggttaccatttatt |
307 |
Q |
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| T |
157844 |
acatgattcacttaaagtcatgttttaatctcaccattcgatttatattgagggttaccacttatt |
157909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 36085101 - 36084900
Alignment:
| Q |
44 |
cattgcattatccttatattatgattttcataaaaggtgtgtttgattctaatttcctctatc-attactg--ttgtagatggaatgtgtaaatctcaga |
140 |
Q |
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||||||||||||| |||||||||||||||||||||| ||| || |||| ||| |||||||||| |||| || || ||||||||| || ||||||||| |
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| T |
36085101 |
cattgcattatccctatattatgattttcataaaagatgtcttcgattgtaacttcctctatcaattaatgtcttatagatggaaaatgagaatctcaga |
36085002 |
T |
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| Q |
141 |
-cacaagaactagcttcagccaaaagaaatatgtggaggcattgagtcgggaagacttttatttactcaaagaatgttcgtggctcttgagcagaggtta |
239 |
Q |
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||||||| ||| |||||||| ||| |||| || |||||||||| || ||||||| ||||| | |||||||||||| ||| |||| || |||||||| |
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| T |
36085001 |
gaacaagaagtagtttcagccataagcaatacgttgaggcattgactctggaagacatttatccattcaaagaatgtttgtgactctgaagtagaggtta |
36084902 |
T |
|
| Q |
240 |
tt |
241 |
Q |
| |
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|| |
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| T |
36084901 |
tt |
36084900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 34549170 - 34549080
Alignment:
| Q |
112 |
tgttgtagatggaatgtgtaaatctcagaca-caagaactagcttcagccaaaagaaatatgtggaggcattgagtcgggaagacttttat |
201 |
Q |
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|||| ||||||||| || |||||||||| | ||||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||||| |
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| T |
34549170 |
tgttatagatggaaaatgaaaatctcagagaacaagaactagcttcagccataagcaatatgttgaggcattgaatctggaagacttttat |
34549080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 34560721 - 34560606
Alignment:
| Q |
44 |
cattgcattatccttatattatgattttcataaaaggt----gtgtttgattctaatttcctctatcattactgttgtagatggaatgtgtaaatctcag |
139 |
Q |
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||||||||||||| |||||||||||||||||||||||| || | ||||||||| ||||| |||||||||| || ||||| ||| || | ||| || |
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| T |
34560721 |
cattgcattatccctatattatgattttcataaaaggtgtacgtctctgattctaacttcctttatcattactcttatagatagaaaatgagattctaag |
34560622 |
T |
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| Q |
140 |
acacaagaactagctt |
155 |
Q |
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|||||||||||||||| |
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| T |
34560621 |
acacaagaactagctt |
34560606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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