View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_29 (Length: 318)
Name: NF5786_low_29
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 46695374 - 46695201
Alignment:
| Q |
17 |
aaagagagaatgtcaagggagggaatcctttcccctaatggatgacatgcctagctaccacaatattggtcccaactttgaatgaacaaattatttaata |
116 |
Q |
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| T |
46695374 |
aaagagaaaatgtcaagggagggaatcctttcccctaatggatgacatgcctagctaccacaatattggtcccaactttgaatgaacaaattatttaata |
46695275 |
T |
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| Q |
117 |
cacaaaaactaaaaagtctcagagtccaattacgagagtttatatatctatagcaatatataaaactaataaac |
190 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46695274 |
cacaaaaactaaaaagtctcagagtccaattactagagtttatatatctatagcaatatataaaactaataaac |
46695201 |
T |
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