View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_3 (Length: 630)
Name: NF5786_low_3
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 619
Target Start/End: Original strand, 4457338 - 4457950
Alignment:
| Q |
17 |
aacttcaagatatgggccacatggacaataattcaatactttacgtcaaagcctaaatctaattcaaaatgtgttcagtggtaataatttagtgaatacg |
116 |
Q |
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| T |
4457338 |
aacttcaagatatgggccacatggacaataattcaatactttacatcaaagcctatatctaattcaaaatgttttcagtggtaataatttagtgaatacg |
4457437 |
T |
|
| Q |
117 |
tttgttt----gtcctcaaatttgcaccaatcaatcaatttcgtttttgttttattcaagatcgataattagttcatcannnnnnnnnaaagttaaatca |
212 |
Q |
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| T |
4457438 |
tttgtttatttgtcctcaaatttgtaccaatcaatcaatttcgtttttgttttattcaagatcgataattagttcatcaattttctttaa-gttaaatca |
4457536 |
T |
|
| Q |
213 |
attgagttcctctgtcatctttgatcattaaacacgatgacttgtgac---aaccaatgaagtggtcttccatgtcaccttccacctaagcaaacacaat |
309 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
4457537 |
attgagttcatctgtcatctttgatcattaaacacgatgatttgtgacgtaaatcaatgaagtggtcttccatgttagcttccacctaagcaaacacaat |
4457636 |
T |
|
| Q |
310 |
ttgaaaactctaattttccctnnnnnnntttcaagctcaaatagagatgatgcatggtggtta-gtgatcataaatagctctgaaagtttatcttcaacc |
408 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||| |||||||||| |
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| T |
4457637 |
ttgaaaactctaattttccctaaaatttcttcaagctcaaatagagatgatgcatggtggttaagcgatcataaatagctatcaaagtcgatcttcaacc |
4457736 |
T |
|
| Q |
409 |
tcaatggttaatggtgagtgtagaatgctggaacgttggtgttcgaggatatgtgttatacgaaagttcaacacattgaagaacttagtcaaacctttct |
508 |
Q |
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| T |
4457737 |
tcaatggttaatggtgagtgtagaatgctggaatgttggtgttcgagtatatgtgttatatgaaagttcaacatattgaagaacttagtcaaatctttct |
4457836 |
T |
|
| Q |
509 |
atagttttcctttcccaaaagcatgtgaaatgagttcatcttgtttgctcgtaattgttgaaccatgaatatca---tttttccccctttgttgatatga |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
4457837 |
atagttttcctttcccaaaagcatgtgaaatgagttcatcttgtttgctcgtaattgttgaaccatgaatatcatttttttttcccctttgttgatatga |
4457936 |
T |
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| Q |
606 |
tttgcatgatgatg |
619 |
Q |
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| T |
4457937 |
tttgcatgatgatg |
4457950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 491
Target Start/End: Complemental strand, 32733539 - 32733447
Alignment:
| Q |
399 |
atcttcaacctcaatggttaatggtgagtgtagaatgctggaacgttggtgttcgaggatatgtgttatacgaaagttcaacacattgaagaa |
491 |
Q |
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|||||||||||| ||| |||||| ||| ||||||||| | || |||||||| | || | ||||||||||| |||| ||| ||||||||||| |
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| T |
32733539 |
atcttcaacctccatgtttaatgatgaatgtagaatgtttgattgttggtgtcctagaagatgtgttataccaaaggccaatacattgaagaa |
32733447 |
T |
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