View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_33 (Length: 289)

Name: NF5786_low_33
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_33
NF5786_low_33
[»] chr4 (13 HSPs)
chr4 (11-289)||(51555642-51555920)
chr4 (74-156)||(35743322-35743404)
chr4 (249-289)||(22684511-22684551)
chr4 (249-289)||(32769622-32769662)
chr4 (254-289)||(29467619-29467654)
chr4 (93-147)||(6360677-6360731)
chr4 (117-155)||(35726742-35726780)
chr4 (249-286)||(3646669-3646706)
chr4 (74-127)||(25487492-25487545)
chr4 (249-289)||(2980455-2980495)
chr4 (249-289)||(6978952-6978992)
chr4 (74-126)||(25896867-25896919)
chr4 (92-132)||(29778880-29778920)
[»] chr3 (20 HSPs)
chr3 (74-124)||(30657371-30657421)
chr3 (74-156)||(12923276-12923355)
chr3 (74-127)||(10540428-10540481)
chr3 (120-156)||(27290895-27290931)
chr3 (81-156)||(45590704-45590779)
chr3 (122-156)||(13804817-13804851)
chr3 (256-289)||(2128255-2128288)
chr3 (120-156)||(5391919-5391955)
chr3 (253-289)||(9279320-9279356)
chr3 (253-289)||(12923319-12923355)
chr3 (120-152)||(20192600-20192632)
chr3 (261-289)||(22214661-22214689)
chr3 (253-289)||(24624250-24624286)
chr3 (253-289)||(27290895-27290931)
chr3 (253-289)||(30923892-30923928)
chr3 (255-287)||(31010444-31010476)
chr3 (253-289)||(31403187-31403223)
chr3 (253-289)||(39723234-39723270)
chr3 (261-289)||(48048984-48049012)
chr3 (120-156)||(53762388-53762424)
[»] chr8 (13 HSPs)
chr8 (78-127)||(13652298-13652347)
chr8 (78-127)||(13710941-13710990)
chr8 (74-147)||(1664431-1664504)
chr8 (74-147)||(1892159-1892232)
chr8 (249-289)||(12361232-12361272)
chr8 (120-156)||(12361232-12361268)
chr8 (249-289)||(14949906-14949946)
chr8 (256-289)||(5088892-5088925)
chr8 (74-139)||(6864408-6864473)
chr8 (253-289)||(3254265-3254301)
chr8 (249-289)||(4055606-4055646)
chr8 (253-289)||(11415194-11415230)
chr8 (249-289)||(25869256-25869296)
[»] scaffold0199 (1 HSPs)
scaffold0199 (74-147)||(6872-6945)
[»] chr6 (12 HSPs)
chr6 (74-115)||(7351606-7351647)
chr6 (122-156)||(9667981-9668015)
chr6 (74-128)||(31774458-31774512)
chr6 (74-127)||(2455892-2455945)
chr6 (253-289)||(696642-696678)
chr6 (253-289)||(2027400-2027436)
chr6 (253-289)||(2034440-2034476)
chr6 (120-156)||(3738109-3738145)
chr6 (249-289)||(9027618-9027658)
chr6 (255-287)||(9732518-9732550)
chr6 (253-289)||(28641743-28641779)
chr6 (120-156)||(31624130-31624166)
[»] chr5 (11 HSPs)
chr5 (248-289)||(40205063-40205104)
chr5 (249-289)||(17258873-17258913)
chr5 (74-128)||(7907963-7908017)
chr5 (249-289)||(7808545-7808586)
chr5 (74-111)||(36542221-36542258)
chr5 (253-289)||(14331407-14331443)
chr5 (261-289)||(15074751-15074779)
chr5 (120-156)||(21768191-21768227)
chr5 (249-289)||(28409355-28409395)
chr5 (249-289)||(28586756-28586796)
chr5 (249-289)||(35963281-35963321)
[»] chr1 (17 HSPs)
chr1 (74-127)||(32515376-32515429)
chr1 (81-123)||(15581340-15581382)
chr1 (123-156)||(11695901-11695934)
chr1 (249-289)||(11941302-11941343)
chr1 (253-289)||(1565529-1565565)
chr1 (253-289)||(4202145-4202181)
chr1 (253-289)||(6292533-6292569)
chr1 (74-114)||(6292587-6292627)
chr1 (249-289)||(10199398-10199438)
chr1 (253-289)||(11639410-11639446)
chr1 (253-289)||(12477281-12477317)
chr1 (249-289)||(24460397-24460437)
chr1 (253-289)||(26184788-26184824)
chr1 (253-289)||(27140518-27140554)
chr1 (253-289)||(28689446-28689482)
chr1 (120-156)||(29723529-29723565)
chr1 (120-156)||(35925730-35925766)
[»] chr2 (14 HSPs)
chr2 (92-132)||(40667484-40667524)
chr2 (253-288)||(787373-787408)
chr2 (122-156)||(1939328-1939362)
chr2 (122-156)||(10285900-10285934)
chr2 (122-156)||(34652032-34652066)
chr2 (256-289)||(10285395-10285428)
chr2 (249-282)||(12215854-12215887)
chr2 (120-156)||(1647276-1647312)
chr2 (249-285)||(3102736-3102772)
chr2 (253-289)||(6547942-6547978)
chr2 (249-289)||(10285900-10285940)
chr2 (80-156)||(13869049-13869125)
chr2 (249-289)||(35538681-35538721)
chr2 (249-289)||(35557115-35557155)
[»] scaffold0003 (1 HSPs)
scaffold0003 (120-154)||(306368-306402)
[»] chr7 (10 HSPs)
chr7 (74-128)||(24048621-24048675)
chr7 (255-289)||(39539777-39539811)
chr7 (122-156)||(45078318-45078352)
chr7 (253-289)||(12834956-12834992)
chr7 (74-114)||(24363535-24363575)
chr7 (261-289)||(27496409-27496437)
chr7 (261-289)||(27503067-27503095)
chr7 (253-289)||(43219638-43219674)
chr7 (249-289)||(44808198-44808238)
chr7 (249-289)||(45078318-45078358)
[»] scaffold0004 (2 HSPs)
scaffold0004 (249-289)||(98630-98670)
scaffold0004 (120-156)||(98634-98670)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 51555642 - 51555920
Alignment:
Q  11 caaaggtatcagtgatgccaaggttgacaagattattgaagcaggtattcattcactttcaattttgagtttatctactcacataagcacttatgagatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51555642 caaaggtatcagtgatgccaaggttgacaagattattgaagcaggtattcattcactttcaattttgagtttatctactcacataagcacttatgagatt 51555741  T
Q  111 gtttagaagagcttatgacatgcccataagctgttttcaacttattagggtccttacatgaaaacaacataagctcttttcagggtcctttatttttagg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51555742 gtttagaagagcttatgacatgcccataagctgttttcaacttattagggtccttacatgaaaacaacataaactcttttcagggtcctttatttttagg 51555841  T
Q  211 gtctgtttggattaacataatcaattgcgagacagtttaaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51555842 gtctgtttggattaacataatcaattgcgagacagtttaaatagcttataacatgtccataagctgttttcagcttatt 51555920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 35743404 - 35743322
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||| ||||||||| | ||||||| || ||||| |||||||||||||||||||||||   ||||| ||||| |||||||||    
T  35743404 tttgagattatctactaatataagcatttgtgagactgtttagaagagcttatgacatgtttataagttgtttccaacttatt 35743322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 22684511 - 22684551
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  22684511 aaatagcttatgatatgtccataagctgttttcagcttatt 22684551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 32769622 - 32769662
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  32769622 aaatagcttataacatgtccataaactgttttcaccttatt 32769662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 29467619 - 29467654
Alignment:
Q  254 gcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||| |||||||||||||||||||||||||||||    
T  29467619 gcttatgacatgtccataagctgttttcagcttatt 29467654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 6360677 - 6360731
Alignment:
Q  93 ataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    |||||||||||||||| | ||| | ||||||||||||||| ||||||| ||||||    
T  6360677 ataagcacttatgagactatttgggagagcttatgacatgtccataagttgtttt 6360731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 35726742 - 35726780
Alignment:
Q  117 aagagcttatgacatgcccataagctgttttcaacttat 155  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  35726742 aagagcttatgacatgtccataagctattttcaacttat 35726780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 3646669 - 3646706
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagctt 286  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  3646669 aaatagcttatgacatgtccataagctgctttcagctt 3646706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 25487492 - 25487545
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||||||||||| |  ||||||||||| | ||||||||| ||||||||||||    
T  25487492 tttgagtttatctattagcataagcacttgtaagattgtttggaagagcttatg 25487545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 2980455 - 2980495
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||| |||| ||||||||||||||||| |||||||||||    
T  2980455 aaataggttatgacatgtccataagctgtgttcagcttatt 2980495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 6978952 - 6978992
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| ||||||| |||||||||||||||||||||    
T  6978952 aaataacttatgacatgtctataagctgttttcagcttatt 6978992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 25896919 - 25896867
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttat 126  Q
    ||||||||||||||||  ||| ||||||| ||||| ||||||| |||||||||    
T  25896919 tttgagtttatctactagcattagcacttgtgagactgtttaggagagcttat 25896867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 29778920 - 29778880
Alignment:
Q  92 cataagcacttatgagattgtttagaagagcttatgacatg 132  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  29778920 cataaacacttgtgagattgtttagaaaagcttatgacatg 29778880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 30657421 - 30657371
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagctt 124  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  30657421 tttgagtttatctactgacataagcacttttgagattgtttggaagagctt 30657371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 12923276 - 12923355
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||||| ||||||||||    |||| ||||| | ||||||||||||||| ||||||| |||||||| ||||||    
T  12923276 tttgagtttatctactaacataagcacc---gagactgtttgggagagcttatgacatgtccataagttgttttcagcttatt 12923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 10540428 - 10540481
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||||||||||| |||||||||||||||| ||| | ||||| ||||||||||    
T  10540428 tttgagtttatctattcacataagcacttatcagactctttaggagagcttatg 10540481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 27290895 - 27290931
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27290895 agcttatgacatgcccataagctgttttcagcttatt 27290931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 45590779 - 45590704
Alignment:
Q  81 ttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||  ||||||||||| ||||| ||||| | ||||||||||| | | ||||||| | |||||||||||||    
T  45590779 ttatctactagcataagcacttgtgagactgtttgggagagcttatgataagtccataagttattttcaacttatt 45590704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 13804851 - 13804817
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  13804851 cttatgacatgtccataagctgttttcaacttatt 13804817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 2128255 - 2128288
Alignment:
Q  256 ttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| ||||||||||||||||||||||    
T  2128255 ttataacatgttcataagctgttttcagcttatt 2128288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 5391955 - 5391919
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  5391955 agcttatgacatgttcataagctgttttcaacttatt 5391919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 9279320 - 9279356
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||||||  |||||||||||||||||||||    
T  9279320 agcttataacatgtatataagctgttttcagcttatt 9279356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 12923319 - 12923355
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  12923319 agcttatgacatgtccataagttgttttcagcttatt 12923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 20192600 - 20192632
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaact 152  Q
    ||||||||||||| |||||||||||||||||||    
T  20192600 agcttatgacatgtccataagctgttttcaact 20192632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 22214661 - 22214689
Alignment:
Q  261 acatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||||||||||||||||||    
T  22214661 acatgtccataagctgttttcagcttatt 22214689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 24624286 - 24624250
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  24624286 agcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 27290895 - 27290931
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27290895 agcttatgacatgcccataagctgttttcagcttatt 27290931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 30923892 - 30923928
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  30923892 agcttatgacatgtctataagctgttttcagcttatt 30923928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 31010476 - 31010444
Alignment:
Q  255 cttataacatgtccataagctgttttcagctta 287  Q
    ||||| |||||||||||||||||||||||||||    
T  31010476 cttatgacatgtccataagctgttttcagctta 31010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 31403223 - 31403187
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  31403223 agcttatgtcatgtccataagctgttttcagcttatt 31403187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 39723234 - 39723270
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  39723234 agcttatgacatgttcataagctgttttcagcttatt 39723270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 48048984 - 48049012
Alignment:
Q  261 acatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||||||||||||||||||    
T  48048984 acatgtccataagctgttttcagcttatt 48049012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 53762388 - 53762424
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  53762388 agcttatgacatgttcataagctgttttcaacttatt 53762424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 13652347 - 13652298
Alignment:
Q  78 agtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  13652347 agtttatctactcacataagcacttgtgaggttgtttggaagagcttatg 13652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 13710990 - 13710941
Alignment:
Q  78 agtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  13710990 agtttatctactcacataagcacttgtgaggttgtttggaagagcttatg 13710941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 1664504 - 1664431
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    ||||||||||||||||  ||||| ||||| ||||| ||||| | ||||||||||||||| |||| || ||||||    
T  1664504 tttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtccattagttgtttt 1664431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 1892159 - 1892232
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    |||||||||||||||   ||||| ||||| ||||||||||| | ||||||||||||||| |||| || ||||||    
T  1892159 tttgagtttatctaccgtcataaacacttgtgagattgtttggcagagcttatgacatgtccattagttgtttt 1892232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 12361272 - 12361232
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  12361272 aaatagcttatgacatgtccataagctgttttcaacttatt 12361232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 12361268 - 12361232
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12361268 agcttatgacatgtccataagctgttttcaacttatt 12361232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 14949946 - 14949906
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  14949946 aaataacttatgacatgtccataagctgttttcagcttatt 14949906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 5088925 - 5088892
Alignment:
Q  256 ttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||||||||||||||||||| ||||||    
T  5088925 ttataacatgtccataagctgttttcaacttatt 5088892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 6864408 - 6864473
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataa 139  Q
    ||||||| |||||| |  |||||||||||| || | ||||| |||||||||||| |||||||||||    
T  6864408 tttgagtctatctatttgcataagcacttaagaaagtgtttggaagagcttatggcatgcccataa 6864473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 3254301 - 3254265
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  3254301 agcttatgacatgttcataagctgttttcagcttatt 3254265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 4055606 - 4055646
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| |||||||||||| ||||||||||||||||    
T  4055606 aaataacttatgacatgtccataaactgttttcagcttatt 4055646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 11415230 - 11415194
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||||||||||||||| || ||||||||||    
T  11415230 agcttataacatgtccataagctattctcagcttatt 11415194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 25869256 - 25869296
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  25869256 aaataacttatgacatgtccataagttgttttcagcttatt 25869296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 6945 - 6872
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgtttt 147  Q
    ||||||||||||||||  ||||| ||||| ||||| ||||| | ||||||||||||||| |||| || ||||||    
T  6945 tttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatgacatgtccattagttgtttt 6872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 7351606 - 7351647
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgttta 115  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  7351606 tttgagtttatctactgacataagcacttgtgagattgttta 7351647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 9667981 - 9668015
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  9667981 cttatgacatgtccataagctgttttcaacttatt 9668015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 31774512 - 31774458
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatga 128  Q
    |||||||||||||||   ||||||||||||||||| ||||| |||||||| ||||    
T  31774512 tttgagtttatctaccggcataagcacttatgagactgtttggaagagctcatga 31774458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 2455945 - 2455892
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||| ||||||||   |||||||||||  |||||||||||||||||||||||    
T  2455945 tttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatg 2455892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 696678 - 696642
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  696678 agcttatgacatgttcataagctgttttcagcttatt 696642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 2027400 - 2027436
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  2027400 agcttatgacatttccataagctgttttcagcttatt 2027436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 2034440 - 2034476
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  2034440 agcttatgacatttccataagctgttttcagcttatt 2034476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 3738145 - 3738109
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  3738145 agcttatgacatgtccataagctgctttcaacttatt 3738109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 9027658 - 9027618
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  9027658 aaataacttatgacatgtccataagttgttttcagcttatt 9027618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 9732550 - 9732518
Alignment:
Q  255 cttataacatgtccataagctgttttcagctta 287  Q
    |||||||||||||||||| ||||||||||||||    
T  9732550 cttataacatgtccataaactgttttcagctta 9732518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 28641743 - 28641779
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  28641743 agcttataacatgttcataagctgtttttagcttatt 28641779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 31624166 - 31624130
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  31624166 agcttatgacatgttcataagctgttttcaacttatt 31624130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 40205063 - 40205104
Alignment:
Q  248 taaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  40205063 taaacagcttataacatgtccataatctgttttcagcttatt 40205104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 17258873 - 17258913
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  17258873 aaatagcttatgacatgttcataagctgttttcagcttatt 17258913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 7908017 - 7907963
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatga 128  Q
    |||||||||||||| | |||||| ||||||||||| ||||| ||||| |||||||    
T  7908017 tttgagtttatctaataacataaacacttatgagactgtttggaagaacttatga 7907963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 7808586 - 7808545
Alignment:
Q  249 aaatagcttataacat-gtccataagctgttttcagcttatt 289  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  7808586 aaatagcttataacattgttcataagctgttttcagcttatt 7808545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 36542221 - 36542258
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattg 111  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  36542221 tttgagcttatctactaacataagcacttatgagattg 36542258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 14331443 - 14331407
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  14331443 agcttatgacatgtccataagctgatttcagcttatt 14331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 15074751 - 15074779
Alignment:
Q  261 acatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||||||||||||||||||    
T  15074751 acatgtccataagctgttttcagcttatt 15074779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 21768191 - 21768227
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  21768191 agcttatgacatgtccatacgctgttttcaacttatt 21768227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 28409355 - 28409395
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||| |||||||||||||||||| | |||||||||||||    
T  28409355 aaatagtttataacatgtccataagttattttcagcttatt 28409395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 28586756 - 28586796
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||| ||| ||||||||||||||||||||    
T  28586756 aaatagcttatgacatatccgtaagctgttttcagcttatt 28586796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 35963321 - 35963281
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||| ||||||||||||| |||||||||||||||    
T  35963321 aaatagcgtatgacatgtccataagttgttttcagcttatt 35963281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 32515376 - 32515429
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatg 127  Q
    |||||||||||||||| |||||||||||| ||||| ||||| | ||||||||||    
T  32515376 tttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatg 32515429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 15581382 - 15581340
Alignment:
Q  81 ttatctactcacataagcacttatgagattgtttagaagagct 123  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||    
T  15581382 ttatctactgacataagcacttgtgagattgtttggaagagct 15581340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 11695934 - 11695901
Alignment:
Q  123 ttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||| |||||||||||||||||||||||    
T  11695934 ttatgacatgtccataagctgttttcaacttatt 11695901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 11941343 - 11941302
Alignment:
Q  249 aaatagcttataacat-gtccataagctgttttcagcttatt 289  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  11941343 aaatagcttataacattgttcataagctgttttcagcttatt 11941302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 1565529 - 1565565
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  1565529 agcttatgacatgtgcataagctgttttcagcttatt 1565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 4202145 - 4202181
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  4202145 agcttatgacatgtccataagctattttcagcttatt 4202181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 6292569 - 6292533
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  6292569 agcttatgacatgttcataagctgttttcagcttatt 6292533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 6292627 - 6292587
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgttt 114  Q
    |||||| ||||||||| |||||||||||| |||||||||||    
T  6292627 tttgagcttatctactgacataagcacttttgagattgttt 6292587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 10199398 - 10199438
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  10199398 aaatagcttatgacatgttcataagttgttttcagcttatt 10199438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 11639410 - 11639446
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  11639410 agcttatgacatgtccataagctgtttttagcttatt 11639446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 12477281 - 12477317
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  12477281 agcttatgacatgtccataagttgttttcagcttatt 12477317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 24460397 - 24460437
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||||| |||||||||||| |||||||||    
T  24460397 aaatagcttatgacatgttcataagctgtttccagcttatt 24460437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 26184824 - 26184788
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  26184824 agcttatgacatgtccataagctgttttcagattatt 26184788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 27140554 - 27140518
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  27140554 agcttatgacatgtccataagttgttttcagcttatt 27140518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 28689446 - 28689482
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  28689446 agcttatgacatgtccataagttgttttcagcttatt 28689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 29723565 - 29723529
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  29723565 agcttatgacatgtccataaactgttttcaacttatt 29723529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 35925766 - 35925730
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  35925766 agcttatgacatgttcataagctgttttcaacttatt 35925730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 40667524 - 40667484
Alignment:
Q  92 cataagcacttatgagattgtttagaagagcttatgacatg 132  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  40667524 cataagcacttgtgagattgtttggaagagcttatgacatg 40667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 787408 - 787373
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttat 288  Q
    ||||||| ||||||||||||||||||||||||||||    
T  787408 agcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 1939328 - 1939362
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  1939328 cttatgacatgtccataagctgttttcaacttatt 1939362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 10285934 - 10285900
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  10285934 cttatgacatgtccataagctgttttcaacttatt 10285900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 34652032 - 34652066
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  34652032 cttatgacatgtccataagctgttttcaacttatt 34652066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 10285428 - 10285395
Alignment:
Q  256 ttataacatgtccataagctgttttcagcttatt 289  Q
    |||| |||||||||||||||||||||||||||||    
T  10285428 ttatgacatgtccataagctgttttcagcttatt 10285395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 12215887 - 12215854
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttca 282  Q
    ||||||||||| ||||||||||||||||||||||    
T  12215887 aaatagcttatgacatgtccataagctgttttca 12215854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 1647312 - 1647276
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1647312 agcttatgacatgctcataagctgttttcagcttatt 1647276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 3102772 - 3102736
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagct 285  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  3102772 aaatagcgtataacatgtccataagctgatttcagct 3102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 6547978 - 6547942
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6547978 agcttatgccatgtccataagctgttttcagcttatt 6547942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 10285940 - 10285900
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| |||||||||||||||||||||| ||||||    
T  10285940 aaataacttatgacatgtccataagctgttttcaacttatt 10285900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 13869049 - 13869125
Alignment:
Q  80 tttatctactcacataagcacttatgagattgtttagaagagcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||| |||||||||||||||||| | |||   ||| ||||||||| | | ||||| ||||||||| |||||    
T  13869049 tttatctactgacataagcacttatgagactatttgagagaacttatgacaagtctataagttgttttcaaattatt 13869125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 35538681 - 35538721
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  35538681 aaatagcttatgacatgttcataagctgttttccgcttatt 35538721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 35557115 - 35557155
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  35557115 aaatagcttatgacatgttcataagctgttttctgcttatt 35557155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 306402 - 306368
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaactta 154  Q
    |||||||||||||||||||||||||||||| ||||    
T  306402 agcttatgacatgcccataagctgttttcagctta 306368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 24048675 - 24048621
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgtttagaagagcttatga 128  Q
    |||||||||||||||| ||||||| |||||  ||| ||||| |||||||||||||    
T  24048675 tttgagtttatctactgacataagtacttaaaagactgtttggaagagcttatga 24048621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 39539777 - 39539811
Alignment:
Q  255 cttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| |||||||||||||||||||||||||||||    
T  39539777 cttatgacatgtccataagctgttttcagcttatt 39539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 45078352 - 45078318
Alignment:
Q  122 cttatgacatgcccataagctgttttcaacttatt 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  45078352 cttatgacatgtccataagctgttttcaacttatt 45078318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 12834956 - 12834992
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  12834956 agcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 24363535 - 24363575
Alignment:
Q  74 tttgagtttatctactcacataagcacttatgagattgttt 114  Q
    ||||||||||||||||  |||||||||||||||||| ||||    
T  24363535 tttgagtttatctactagcataagcacttatgagatagttt 24363575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 27496409 - 27496437
Alignment:
Q  261 acatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||||||||||||||||||    
T  27496409 acatgtccataagctgttttcagcttatt 27496437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 27503067 - 27503095
Alignment:
Q  261 acatgtccataagctgttttcagcttatt 289  Q
    |||||||||||||||||||||||||||||    
T  27503067 acatgtccataagctgttttcagcttatt 27503095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 43219638 - 43219674
Alignment:
Q  253 agcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  43219638 agcttatgacatgttcataagctgttttcagcttatt 43219674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 44808238 - 44808198
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| |||||||||||| ||||||||||||||||    
T  44808238 aaataacttatgacatgtccataacctgttttcagcttatt 44808198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 45078358 - 45078318
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||| ||||| |||||||||||||||||||||| ||||||    
T  45078358 aaataacttatgacatgtccataagctgttttcaacttatt 45078318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 98630 - 98670
Alignment:
Q  249 aaatagcttataacatgtccataagctgttttcagcttatt 289  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  98630 aaatagcttatgacatgttcataagctgttttcaacttatt 98670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 98634 - 98670
Alignment:
Q  120 agcttatgacatgcccataagctgttttcaacttatt 156  Q
    |||||||||||||  ||||||||||||||||||||||    
T  98634 agcttatgacatgttcataagctgttttcaacttatt 98670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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