View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_40 (Length: 250)
Name: NF5786_low_40
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_40 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0599 (2 HSPs) |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 12634747 - 12634510
Alignment:
| Q |
13 |
aatatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaatgtgaattcacttactaacaaatgaaatt |
112 |
Q |
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| T |
12634747 |
aatatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaatgtgaattcacttactaacaaatgaaatt |
12634648 |
T |
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| Q |
113 |
actcaattctgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgg |
212 |
Q |
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| T |
12634647 |
actcaattctgataggatgccgtacatgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattataatgaatgg |
12634548 |
T |
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| Q |
213 |
gaagaagaaatccaaaggtaagagtaataacaacataa |
250 |
Q |
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| T |
12634547 |
gaagaagaaatccaaaggtaagagtaataaccacataa |
12634510 |
T |
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Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 31151524 - 31151399
Alignment:
| Q |
122 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
221 |
Q |
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| T |
31151524 |
tgataggatgccgtacgtgaacaatgatgtttatcttgagcttgcaaagttagattacaactattgtcaagcaatgcattatgatgaatggga---agaa |
31151428 |
T |
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| Q |
222 |
atccaaaggtaagagtaataacaacataa |
250 |
Q |
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| T |
31151427 |
atccaaaggtaagaataaaaaccacataa |
31151399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 31151726 - 31151651
Alignment:
| Q |
13 |
aatatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaatgtga |
88 |
Q |
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| T |
31151726 |
aatatggtggcgaaaatgatgtttggattggtaagaccctttacaggtaagaatcttaattttacattgaatgtga |
31151651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 3044 - 3165
Alignment:
| Q |
122 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
221 |
Q |
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| T |
3044 |
tgataggatgccgtacatgaccaatgatgtttaacttgagcttgcaaagttggattacaacaattgtcaagcaatgcattatgatgaatggaaagaagaa |
3143 |
T |
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| Q |
222 |
atccaaaggtaagagtaataac |
243 |
Q |
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| T |
3144 |
atccaaaggtaagggtagtaac |
3165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 2847 - 2912
Alignment:
| Q |
18 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaa |
83 |
Q |
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| T |
2847 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaa |
2912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 11555 - 11434
Alignment:
| Q |
122 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
221 |
Q |
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| T |
11555 |
tgataggatgccgtacatgaccaatgatgtttatcttgagcttgcaaagttggattacaacaattgtcaagcaatgcattatgatgaatggaaagaagaa |
11456 |
T |
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| Q |
222 |
atccaaaggtaagagtaataac |
243 |
Q |
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||||||||||||| ||| |||| |
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| T |
11455 |
atccaaaggtaagggtagtaac |
11434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 11752 - 11687
Alignment:
| Q |
18 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaa |
83 |
Q |
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| T |
11752 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaa |
11687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 11911350 - 11911471
Alignment:
| Q |
122 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
221 |
Q |
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| T |
11911350 |
tgataggatgccgtacatggccaatgatgtttaccttgagcttgcaaagttggattacaacaattgtcaagcaatgcattatgatgaatggaaagaagaa |
11911449 |
T |
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| Q |
222 |
atccaaaggtaagagtaataac |
243 |
Q |
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| T |
11911450 |
atccaaaggtaagggtagtaac |
11911471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 11911153 - 11911218
Alignment:
| Q |
18 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaa |
83 |
Q |
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| T |
11911153 |
ggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagaatcttaattttacattgaa |
11911218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 37960068 - 37960186
Alignment:
| Q |
122 |
tgataggatgccgtacgtgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattatattgaatgggaagaagaa |
221 |
Q |
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||||||||||||||| |||||||||||| |||| || |||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
37960068 |
tgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggattacaacaattgtcaagcaatgcattatgatgaatgg---aaagaa |
37960164 |
T |
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| Q |
222 |
atccaaaggtaagagtaataac |
243 |
Q |
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|| || |||||||||||||||| |
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| T |
37960165 |
atacacaggtaagagtaataac |
37960186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 37959868 - 37959937
Alignment:
| Q |
15 |
tatggtggtgaaaatgatgtttggattggcaagaccctttacaggtaagagtcttaattttacattgaat |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
37959868 |
tatggtggtgaaaatgatgtttggattggcaagaccctttataggtaagaatcttaattttacattgaat |
37959937 |
T |
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