View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5786_low_41 (Length: 246)
Name: NF5786_low_41
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_41 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5827782 - 5827551
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5827782 |
ccatatggatctagcacaaatctagtaatcattgaactgttaaacgttgcatattgataagtaacttctttatcagttaacatgaatgagtaattcaaga |
5827683 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827682 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
5827583 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcctatacgaaaact |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5827582 |
aaaaccatgagtatctatcctatacgaaaact |
5827551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20344088 - 20344307
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||| || | ||||| ||||||||| || |||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
20344088 |
ccatatgtatctagcacaaatctagtaataatgaaattggtccacgtttgatattgatatgtgacttctttgtcagtaatcacaaatgagtaattcaaga |
20344187 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
| |||| || | |||||||| ||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
20344188 |
ccctattaattctttgccaa--aactc----------atatccattccatgaccctcctctatacataattgttgttccctttgcaataacttgttgagg |
20344275 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcctatacgaaaact |
232 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
20344276 |
aaaaccatgagtatcgatcctatacgaaaact |
20344307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5848511 - 5848291
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||||||| || ||| |||||||| |||| |||||||| |||||||||||||||||||||||||| | |
|
|
| T |
5848511 |
ccatatggatttagcacaactctagtaataattaaactgtttaaagtttcatattgaaaagtgacttctttgtcagttaacacaaatgagtaattcaata |
5848412 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
||| | | ||||||||| | ||||| ||||| ||||||||||||| ||||| |||||| | | | |||| ||||||||||||| |||||||| |
|
|
| T |
5848411 |
tattataatttctttgccaagtagctccagtgaaaagatatccattccacgaccctcctctaaatatagttgtcgttccctttgcaatttggtgttgagg |
5848312 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcct |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
5848311 |
aaaaccgtgagtatctatcct |
5848291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5490645 - 5490872
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||| ||||||| || ||| |||||||||||| | |||||| ||||| | ||| | ||| ||||||||| |
|
|
| T |
5490645 |
ccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagagaattctttgtcagtgaccactaccgagaaattcaaga |
5490744 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
||||||| | | || |||||||||| || ||||| || |||||||||||||||| ||||||||||||| || |||||||||| |||| ||||||| |
|
|
| T |
5490745 |
ctctatgcagtcttagccaagaaacaccggtgaaaagaaatccattccatgaccctcctctatacagaacgtttgctccctttgcagtaactagttgagg |
5490844 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcctatacgaa |
228 |
Q |
| |
|
||||||||| ||||||||| |||||||| |
|
|
| T |
5490845 |
aaaaccatgtgtatctatcttatacgaa |
5490872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5503458 - 5503681
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||| ||||||| || ||| |||||||||||| | |||||| || || | || | |||| ||||||||| |
|
|
| T |
5503458 |
ccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagagaattctttgtcggtgactactactgagaaattcaaga |
5503557 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
||||| | | | ||||||||||||| ||| ||||| || |||||||||||||||| ||||||||||||| || |||||||||| ||||| ||||||| |
|
|
| T |
5503558 |
ctctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctatacagaacctttgctccctttgcagtaaccagttgagg |
5503657 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcctata |
224 |
Q |
| |
|
||||||||| ||||||||| |||| |
|
|
| T |
5503658 |
aaaaccatgtgtatctatcttata |
5503681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5485224 - 5485447
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||| ||||||| || ||| |||||||||||| | |||||| || || | || | |||| ||||||||| |
|
|
| T |
5485224 |
ccatatggatctagcaccaatctagtattaattgaactgttcaaagtttcatattgataagagaattctttgtcggtgactactactgagaaattcaaga |
5485323 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
||||| | | | ||||||||||||| ||| ||||| || |||||||||||||||| |||||||| |||| | || |||||||| | ||||| ||||||| |
|
|
| T |
5485324 |
ctctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctatatagaacttttgctccctttgaattaaccagttgagg |
5485423 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcctata |
224 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
5485424 |
aaaaccatgtatatctatcttata |
5485447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 5853808 - 5853589
Alignment:
| Q |
5 |
atggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaagactct |
104 |
Q |
| |
|
||||||||||| | | ||||||||| ||| ||| ||| | ||| |||||||||||| | |||||| ||||| |||| | |||| ||||||||||||| |
|
|
| T |
5853808 |
atggatctagctccattctagtaataattgaacggttcatagtttcatattgataagagaattctttgtcagtgaacattactgagaaattcaagactct |
5853709 |
T |
|
| Q |
105 |
atgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgaggaaaa |
204 |
Q |
| |
|
|| | | ||||||||||||| ||| ||||| || |||||||||||||||| |||||||||| || | ||| ||||||| || ||||| ||||||||||| |
|
|
| T |
5853708 |
gtgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctatacaaaaatctttctcccttttcagtaaccagttgaggaaaa |
5853609 |
T |
|
| Q |
205 |
ccatgagtatctatcctata |
224 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
5853608 |
ccatgcatatctatcctata |
5853589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5446906 - 5447133
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
|||| ||| |||||||| | ||||||||| ||| ||||| | || ||| ||||||| |||| | |||||| ||||| || | | ||| |||||| || |
|
|
| T |
5446906 |
ccatttgggtctagcacgactctagtaataattgaactgctcaaagtttcatattggtaagagatttctttgtcagtgaatattacagagaaattcatga |
5447005 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| ||||| || |||||||||||||||| |||||||||||| | || || |||||| ||||| ||||||| |
|
|
| T |
5447006 |
ctctatgcactctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaaatattgccccgtttgcagtaaccagttgagg |
5447105 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcctatacgaa |
228 |
Q |
| |
|
||||||||| ||||||||| |||||||| |
|
|
| T |
5447106 |
aaaaccatgtgtatctatcttatacgaa |
5447133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 5455488 - 5455691
Alignment:
| Q |
21 |
tctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaagactctatgaactatttgccaa |
120 |
Q |
| |
|
||||||||| ||| ||||||| || ||| |||||| |||| | |||||| ||||| |||| | |||| |||||||||||||||| | | |||||||| |
|
|
| T |
5455488 |
tctagtaataattgaactgttcaaggtttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaagactctatgcattctttgccaa |
5455587 |
T |
|
| Q |
121 |
gaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgaggaaaaccatgagtatctatcc |
220 |
Q |
| |
|
||||| ||| ||||| || |||||||||||||||| |||||||||||||| || ||||||||| ||| | |||| ||||||||||| ||||||||| |
|
|
| T |
5455588 |
gaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatct |
5455687 |
T |
|
| Q |
221 |
tata |
224 |
Q |
| |
|
|||| |
|
|
| T |
5455688 |
tata |
5455691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 5801978 - 5801885
Alignment:
| Q |
131 |
tgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgaggaaaaccatgagtatctatcctata |
224 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||||| |||| |||||||||| |||| |||||||||||||| | ||||||||||||| |
|
|
| T |
5801978 |
tgaaaagaaatccattccatgaccctcctctatacagaactgttgctccctttgcagtaacaagttgaggaaaaccaggcatatctatcctata |
5801885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 5526306 - 5526505
Alignment:
| Q |
9 |
atctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaagactctatga |
108 |
Q |
| |
|
||||||||| | ||||||| | ||| ||||||| || ||| |||||||||||| |||||||| ||| | || || | |||| |||||||||||||| |
|
|
| T |
5526306 |
atctagcaccagtctagtattaattgaactgttcaaagtttcatattgataagagacttctttgtcactgaaaactactgagaaattcaagactctagac |
5526405 |
T |
|
| Q |
109 |
actatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgaggaaaaccat |
208 |
Q |
| |
|
| ||||||| | | ||| ||||| || |||||||||||| || ||||||||||||||| || ||||||| | ||||| ||||||||||||||| |
|
|
| T |
5526406 |
aaactttgccagggagaaccactgaaaagaaatccattccatggtcctcctctatacagaattcttgctccctttactgtaaccagttgaggaaaaccat |
5526505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25808906 - 25808679
Alignment:
| Q |
1 |
ccatatggatctagcacaaatctagtaatcattaaactgttaaacgttgcatattgataagtaacttctttatcagttaacacaaatgagtaattcaaga |
100 |
Q |
| |
|
|||| ||| |||||||| | ||||||||| ||| ||||| | || ||| ||||||| |||| | |||||| ||||| || | | ||| |||||| || |
|
|
| T |
25808906 |
ccatttgggtctagcacgactctagtaataattgaactgctcaaagtttcatattggtaagagatttctttgtcagtgaatattacagagaaattcatga |
25808807 |
T |
|
| Q |
101 |
ctctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgagg |
200 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| ||||| || |||||||||||||||| |||||||||||| | || || |||||| ||||| ||||||| |
|
|
| T |
25808806 |
ctctatgcactctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaaatattgccccgtttgcagtaaccagttgagg |
25808707 |
T |
|
| Q |
201 |
aaaaccatgagtatctatcctatacgaa |
228 |
Q |
| |
|
||||||||| ||||||||| |||||||| |
|
|
| T |
25808706 |
aaaaccatgtgtatctatcttatacgaa |
25808679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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