View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_47 (Length: 240)
Name: NF5786_low_47
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 8747565 - 8747696
Alignment:
| Q |
92 |
aacatgagttagcaatgtagaatgagggaaactcgatgaagtagcttcacacagcaacatgctattcaaggggccaaaaccatgatgagactttcaaact |
191 |
Q |
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| T |
8747565 |
aacattagttagcaatgtagaatgagggaaatttgatgaagaagcttcacgtagcaacatgctcttcaaggggccaaaaccatgatgagactttcaaatt |
8747664 |
T |
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| Q |
192 |
aacatcataagaatgtctaccgtgtgtgaact |
223 |
Q |
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| T |
8747665 |
aacatgatatgaatgtccacggtgtgtgaact |
8747696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 47670108 - 47669976
Alignment:
| Q |
91 |
taacatgagttagcaatgtagaatgagggaaactcgatgaagtagcttcacacagcaacatgctattcaaggggccaaaaccatgatgagactttcaaac |
190 |
Q |
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| T |
47670108 |
taacataagttagcaatttagaatgagggaaatatgatgaagaagcttcacgcagcaacatgctcttcaagtggccaaaatcattacgaaactttcaaat |
47670009 |
T |
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| Q |
191 |
taacatcataagaatgtctaccgtgtgtgaact |
223 |
Q |
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| T |
47670008 |
taacatgataagaatgtctacggtgtatgaact |
47669976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 47671527 - 47671476
Alignment:
| Q |
16 |
atgtattaacatggaatcatatatgtagctcggaaaagaacatttcatattca |
68 |
Q |
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| T |
47671527 |
atgtattgacatagaatcatatatggagctcgggaaa-aacatttcatattca |
47671476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 25798268 - 25798200
Alignment:
| Q |
16 |
atgtattaacatggaatcatatatgtagc-tcggaaaagaacatttcatattcatttgaaccttgaaaa |
83 |
Q |
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| T |
25798268 |
atgtattaacatagaatcatatatgtagcttagaaaaaaaacatgtcatattcatttgatccttgaaaa |
25798200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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