View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_48 (Length: 239)

Name: NF5786_low_48
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_48
NF5786_low_48
[»] chr1 (3 HSPs)
chr1 (127-221)||(32039224-32039314)
chr1 (1-57)||(32038374-32038430)
chr1 (77-135)||(32038415-32038473)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 32039224 - 32039314
Alignment:
Q  127 aaagaaaaaatatatgaattttaatcgataaaaatatgtgatacagaacatgtattgatactcttaattatagttataaaatgaaggaagtagta 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||||    
T  32039224 aaagaaaaaatatatgaattttaatcgataaaaatatgtgatacagaacatgtattgatactc----ttataattataaaatgaaggaagtagta 32039314  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32038374 - 32038430
Alignment:
Q  1 acttgagtgatgtaagactcgaaacaactttaataactcttaataagcttttcaacc 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32038374 acttgagtgatgtaagactcgaaacaactttaataactcttaataagcttttcaacc 32038430  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 32038415 - 32038473
Alignment:
Q  77 aataagcttttcaaccttaattaaagccatgtaagctacaccaaatcttaaaagaaaaa 135  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32038415 aataagcttttcaaccttaattaaagtcatgtaagctacaccaaatcttaaaagaaaaa 32038473  T

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