View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5786_low_49 (Length: 239)
Name: NF5786_low_49
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_49 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 38454489 - 38454268
Alignment:
| Q |
18 |
tgtcctaaccaaaaaatattggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38454489 |
tgtcctaaccaaaaaacattggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaat |
38454390 |
T |
|
| Q |
118 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38454389 |
aatttatgatcaatttgcgggcattttataccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
38454290 |
T |
|
| Q |
218 |
attaaaaataaaagataaatat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38454289 |
attaaaaataaaagataaatat |
38454268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 38191559 - 38191777
Alignment:
| Q |
18 |
tgtcctaaccaaaaaatattggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38191559 |
tgtcctaaccaaaaaagattggtgataatcttgattctactcaagagtttgtcattgttattcagtgcaaagaataagacaat-gtgcttcaaagagaat |
38191657 |
T |
|
| Q |
118 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38191658 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
38191757 |
T |
|
| Q |
218 |
attaaaaataaaagataaat |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38191758 |
attaaaaataaaagataaat |
38191777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 38218784 - 38219002
Alignment:
| Q |
18 |
tgtcctaaccaaaaaatattggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38218784 |
tgtcctaaccaaaaaagattggtgataatcttgattctactcaagagtttgtcattgttattcagtgcaaagaataagacaat-gtgcttcaaagagaat |
38218882 |
T |
|
| Q |
118 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38218883 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
38218982 |
T |
|
| Q |
218 |
attaaaaataaaagataaat |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38218983 |
attaaaaataaaagataaat |
38219002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 38179572 - 38179366
Alignment:
| Q |
18 |
tgtcctaaccaaaaaatattggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38179572 |
tgtcctaaccaaaaaagattggtgataatcttgattctactcaagagtttgtcattgttattcagtgcaaagaataagacaat-gtgcttcaaagagaat |
38179474 |
T |
|
| Q |
118 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38179473 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
38179374 |
T |
|
| Q |
218 |
attaaaaa |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
38179373 |
attaaaaa |
38179366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 38206796 - 38206590
Alignment:
| Q |
18 |
tgtcctaaccaaaaaatattggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38206796 |
tgtcctaaccaaaaaagattggtgataatcttgattctactcaagagtttgtcattgttattcagtgcaaagaataagacaat-gtgcttcaaagagaat |
38206698 |
T |
|
| Q |
118 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38206697 |
aatttatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagttt |
38206598 |
T |
|
| Q |
218 |
attaaaaa |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
38206597 |
attaaaaa |
38206590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 38168411 - 38168595
Alignment:
| Q |
35 |
attggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaataatttatgatcaatttg |
134 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38168411 |
attggtgataattttgtttctactcaagagttcgtcaatgtttttcagtgcaaagaataagacaag-gtgcttcaaagagaataatttatg--------- |
38168500 |
T |
|
| Q |
135 |
cgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagtttattaaaaataaaagata |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38168501 |
----------gtaccgtttaacactaatgattttggaataaatgcttagcaaaaaataagaacaaacgattggtgcatagtttattaaaaataaaagata |
38168590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 38198693 - 38198509
Alignment:
| Q |
35 |
attggtgataatcttgattctactcaagagtttgtcaatgttattcagtgcaaagaataagacaaaagtgcttcaaagagaataatttatgatcaatttg |
134 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38198693 |
attggtgataattttgtttctactcaagagttcgtcaatgtttttcagtgcaaagaataagacaag-gtgcttcaaagagaataatttatg--------- |
38198604 |
T |
|
| Q |
135 |
cgggcattttgtaccgtttaacactaatgagtttggaataaatgcttagcaaaaaacaagaacaaactattggtgcatagtttattaaaaataaaagata |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38198603 |
----------gtaccgtttaacactaatgattttggaataaatgcttagcaaaaaataagaacaaacgattggtgcatagtttattaaaaataaaagata |
38198514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 38151099 - 38151149
Alignment:
| Q |
122 |
tatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaa |
172 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
38151099 |
tatgatcaatttttgggcattttataccctttaacactaatgattttggaa |
38151149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University