View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_53 (Length: 238)
Name: NF5786_low_53
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_53 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0534 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 12633892 - 12634111
Alignment:
| Q |
19 |
atcaagggttgtcagcaaaattcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12633892 |
atcaagggttgtcagcaaaattcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttg |
12633991 |
T |
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| Q |
119 |
ttgcatcagtggtgaaatttaatgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcccaatatatggtaactactaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12633992 |
ttgcatcagtggtgaaatttaatgtctacaaagaactattaatcagtgttcaaatataaaatattattactagatatgcccgatatatggtaactactaa |
12634091 |
T |
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| Q |
219 |
cttcatgaattagactcaac |
238 |
Q |
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| T |
12634092 |
cttcatgaattagactcaac |
12634111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 19852009 - 19851811
Alignment:
| Q |
40 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
139 |
Q |
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| T |
19852009 |
tcccatgagtttttcctctctcttgttctcgtctaaccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagtgatgaaattta |
19851910 |
T |
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| Q |
140 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcccaatatatggtaactactaacttcatgaattagactcaac |
238 |
Q |
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| T |
19851909 |
acgtctacagagagctattaaccaatgttcaaatataaaatattattactagatatgccagatatatggtaactactaacttcatgaattagactcaac |
19851811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 28050315 - 28050117
Alignment:
| Q |
40 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
139 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
28050315 |
tcccatgagtttttcctctctcttgttctcgtctaaccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagtgatgaaattta |
28050216 |
T |
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| Q |
140 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcccaatatatggtaactactaacttcatgaattagactcaac |
238 |
Q |
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| T |
28050215 |
acgtctacagagagctattaaccaatgttcaaatataaaatattattactagatatgccagatatatggtaactactaacttcatgaattagacacaac |
28050117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 9570 - 9372
Alignment:
| Q |
40 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
139 |
Q |
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|||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
9570 |
tcccatgagtttttcctctctcttgttctcgtctagccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagtgatgaaattta |
9471 |
T |
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| Q |
140 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcccaatatatggtaactactaacttcatgaattagactcaac |
238 |
Q |
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| T |
9470 |
acgtctacagagagctattaaccaatgttcaaatataaaatattattactagatatgccagatatatggtaactactaacttcatgaattagacacaac |
9372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 17231593 - 17231395
Alignment:
| Q |
40 |
tcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaattacacatgcatatttaaaacacattttgttgcatcagtggtgaaattta |
139 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||| |
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| T |
17231593 |
tcccatgagtttttcctctctcttgttctcgtctaaccccctgcaacaaattacacatgcatatctaaaacatattttgttgcatcagcgatgaaattta |
17231494 |
T |
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| Q |
140 |
atgtctacaaagagctattaatcagtgttcaaatataaaatattattactagatatgcccaatatatggtaactactaacttcatgaattagactcaac |
238 |
Q |
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| ||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |
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| T |
17231493 |
acgtcaacagagagctattaaccaatgttcaaatataaaatattattactagatatgctagatatatggtaactactaacttcttgaattagacacaac |
17231395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 37960753 - 37960681
Alignment:
| Q |
19 |
atcaagggttgtcagcaaaattcccatgagtttctcctctctcttgttcttgtctaaccccctgcaacaaatt |
91 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
37960753 |
atcaagggttgtcagcaaaatccccatgagtttctcctctctcttgttcttgtctatcaccctgcaacaaatt |
37960681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 37960617 - 37960567
Alignment:
| Q |
184 |
attactagatatgcccaatatatggtaactactaacttcatgaattagact |
234 |
Q |
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| T |
37960617 |
attactagatatgcttgatatatggtaactactaatttcatgaattagact |
37960567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 37960662 - 37960626
Alignment:
| Q |
102 |
atttaaaacacattttgttgcatcagtggtgaaattt |
138 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
37960662 |
atttaaaacacattttgttgcatcagtggttaaattt |
37960626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 3577 - 3548
Alignment:
| Q |
208 |
gtaactactaacttcatgaattagactcaa |
237 |
Q |
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| T |
3577 |
gtaactactaacttcatgaattagactcaa |
3548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 11911883 - 11911854
Alignment:
| Q |
208 |
gtaactactaacttcatgaattagactcaa |
237 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11911883 |
gtaactactaacttcatgaattagactcaa |
11911854 |
T |
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