View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_55 (Length: 227)

Name: NF5786_low_55
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_55
NF5786_low_55
[»] chr4 (33 HSPs)
chr4 (1-218)||(45772152-45772369)
chr4 (12-218)||(45778570-45778773)
chr4 (12-218)||(45772881-45773088)
chr4 (19-142)||(52870072-52870195)
chr4 (19-61)||(40847684-40847726)
chr4 (60-218)||(38709481-38709644)
chr4 (23-83)||(198164-198225)
chr4 (114-161)||(55874644-55874691)
chr4 (19-61)||(199263-199305)
chr4 (19-61)||(388760-388802)
chr4 (60-146)||(32894615-32894699)
chr4 (60-146)||(49347128-49347212)
chr4 (20-61)||(199007-199048)
chr4 (20-61)||(20075533-20075574)
chr4 (20-61)||(26423767-26423808)
chr4 (20-61)||(55816487-55816528)
chr4 (20-59)||(20422139-20422178)
chr4 (19-53)||(2713888-2713922)
chr4 (19-61)||(12639972-12640014)
chr4 (19-53)||(18501746-18501780)
chr4 (23-61)||(25370429-25370467)
chr4 (19-61)||(33570313-33570355)
chr4 (20-58)||(36111256-36111294)
chr4 (41-126)||(37275117-37275202)
chr4 (19-61)||(55815832-55815874)
chr4 (20-53)||(389450-389483)
chr4 (20-61)||(12640623-12640664)
chr4 (19-83)||(33758101-33758166)
chr4 (19-60)||(35428238-35428279)
chr4 (20-61)||(36945260-36945301)
chr4 (20-61)||(48090474-48090515)
chr4 (20-61)||(52597498-52597539)
chr4 (20-61)||(52869455-52869496)
[»] chr8 (22 HSPs)
chr8 (12-218)||(41828737-41828942)
chr8 (60-218)||(34666823-34666983)
chr8 (179-218)||(41828198-41828237)
chr8 (19-61)||(7818481-7818523)
chr8 (19-61)||(33114225-33114267)
chr8 (19-61)||(35237266-35237308)
chr8 (20-61)||(43481318-43481359)
chr8 (20-61)||(43591015-43591056)
chr8 (19-54)||(37532583-37532618)
chr8 (19-62)||(39852161-39852204)
chr8 (19-61)||(11999117-11999159)
chr8 (19-61)||(16889202-16889244)
chr8 (92-146)||(27322501-27322555)
chr8 (7-53)||(38573095-38573141)
chr8 (19-53)||(41761806-41761840)
chr8 (20-61)||(11998464-11998505)
chr8 (20-61)||(16880555-16880596)
chr8 (20-61)||(30116033-30116074)
chr8 (20-61)||(40907607-40907648)
chr8 (9-53)||(10199098-10199142)
chr8 (20-52)||(35237909-35237941)
chr8 (20-52)||(37533323-37533355)
[»] chr7 (21 HSPs)
chr7 (30-146)||(23632941-23633054)
chr7 (19-142)||(85005-85128)
chr7 (67-145)||(39146846-39146921)
chr7 (46-150)||(41713735-41713839)
chr7 (20-63)||(24044078-24044121)
chr7 (19-61)||(27855573-27855615)
chr7 (20-61)||(19816272-19816313)
chr7 (20-61)||(22275433-22275474)
chr7 (20-61)||(34853399-34853440)
chr7 (20-61)||(36683501-36683542)
chr7 (20-61)||(42456553-42456594)
chr7 (37-85)||(45026323-45026371)
chr7 (60-114)||(12924161-12924214)
chr7 (23-61)||(22276113-22276151)
chr7 (19-61)||(34854033-34854075)
chr7 (19-61)||(36682842-36682884)
chr7 (23-61)||(46814416-46814454)
chr7 (20-61)||(47814672-47814713)
chr7 (23-52)||(48881068-48881097)
chr7 (42-145)||(41712995-41713097)
chr7 (19-51)||(42455928-42455960)
[»] chr5 (12 HSPs)
chr5 (19-142)||(39149390-39149510)
chr5 (11-145)||(6903185-6903316)
chr5 (42-146)||(4790132-4790236)
chr5 (42-150)||(41785392-41785500)
chr5 (19-61)||(3957507-3957549)
chr5 (21-61)||(25075034-25075074)
chr5 (21-61)||(25133003-25133043)
chr5 (19-61)||(4929543-4929585)
chr5 (19-61)||(28076006-28076048)
chr5 (19-53)||(33430050-33430084)
chr5 (19-51)||(26688096-26688128)
chr5 (19-51)||(26957827-26957859)
[»] chr1 (14 HSPs)
chr1 (30-164)||(29148958-29149090)
chr1 (42-150)||(51132219-51132327)
chr1 (19-61)||(1403047-1403089)
chr1 (19-61)||(42838944-42838986)
chr1 (20-53)||(27797125-27797158)
chr1 (20-61)||(42839709-42839750)
chr1 (83-126)||(1184930-1184973)
chr1 (19-53)||(49534441-49534475)
chr1 (20-61)||(1403724-1403765)
chr1 (20-53)||(8560787-8560820)
chr1 (20-61)||(43368872-43368913)
chr1 (20-61)||(52859825-52859866)
chr1 (17-53)||(45611159-45611195)
chr1 (42-145)||(51129403-51129505)
[»] chr3 (19 HSPs)
chr3 (19-142)||(41040578-41040702)
chr3 (42-150)||(1127394-1127502)
chr3 (20-61)||(41459138-41459179)
chr3 (7-62)||(50687744-50687799)
chr3 (19-61)||(3944902-3944944)
chr3 (20-62)||(25025800-25025842)
chr3 (19-62)||(25025181-25025224)
chr3 (10-53)||(53269393-53269436)
chr3 (19-53)||(23584928-23584962)
chr3 (19-53)||(23599751-23599785)
chr3 (23-61)||(37375505-37375543)
chr3 (20-58)||(44868658-44868696)
chr3 (20-58)||(55281843-55281881)
chr3 (20-61)||(8427780-8427821)
chr3 (20-61)||(23584245-23584286)
chr3 (20-61)||(23599068-23599109)
chr3 (20-61)||(29342349-29342390)
chr3 (20-61)||(38279417-38279458)
chr3 (42-145)||(1128142-1128244)
[»] chr2 (23 HSPs)
chr2 (9-61)||(12206785-12206837)
chr2 (60-146)||(17947851-17947935)
chr2 (23-82)||(32471950-32472010)
chr2 (6-61)||(4386997-4387052)
chr2 (23-61)||(6849579-6849617)
chr2 (19-61)||(9224273-9224315)
chr2 (19-61)||(16571125-16571167)
chr2 (20-61)||(6849296-6849337)
chr2 (20-61)||(10883295-10883336)
chr2 (20-61)||(28224425-28224466)
chr2 (19-59)||(18950534-18950574)
chr2 (20-58)||(7583140-7583178)
chr2 (19-61)||(7716678-7716720)
chr2 (19-61)||(8113337-8113379)
chr2 (23-61)||(11256777-11256815)
chr2 (23-61)||(16903126-16903164)
chr2 (19-53)||(20244216-20244250)
chr2 (19-61)||(28223795-28223837)
chr2 (19-65)||(43743835-43743881)
chr2 (20-61)||(3595254-3595295)
chr2 (20-61)||(7717321-7717362)
chr2 (9-58)||(14565214-14565263)
chr2 (20-53)||(16887591-16887624)
[»] scaffold0229 (1 HSPs)
scaffold0229 (19-61)||(15270-15312)
[»] chr6 (6 HSPs)
chr6 (42-143)||(1529328-1529429)
chr6 (19-61)||(13936677-13936719)
chr6 (19-61)||(33668228-33668270)
chr6 (20-61)||(6032166-6032207)
chr6 (42-145)||(1528591-1528693)
chr6 (46-145)||(18483039-18483137)
[»] scaffold0368 (1 HSPs)
scaffold0368 (19-61)||(11821-11863)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 45772152 - 45772369
Alignment:
Q  1 ctatataaataggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgtaccattagattaaaagaggagcatagattttac 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45772152 ctatataaataggtggagtttcacatggaaaaggttaatcctttcccaccataagaaagttttttgtaccattagattaaaagaggagcatagattttac 45772251  T
Q  101 gatggtctgcccacactatatattttcccctcatcatcttcaacctcatgagaatccaaatatgttgttcactactagcaagagactacaatccatcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45772252 gatggtctgcccacactatatattttcccctcatcatcttcaacctcatgagaatgcaaatatgttgttcactactagcaagagactacaatccatcttc 45772351  T
Q  201 atcaagttgttcttaaaa 218  Q
    ||||||||||||||||||    
T  45772352 atcaagttgttcttaaaa 45772369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 45778773 - 45778570
Alignment:
Q  12 ggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcc 111  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45778773 ggtggagtttcacatgggaaaggttaatcctttcccaccat-agaaagttttttttaccattagattaaaagaggagcatagattttacgatggtctgcc 45778675  T
Q  112 cacactatatattttcccctcatcatcttcaacctcatgagaatccaaatatgttgttcactactagcaagagactacaatccatcttcatcaagttgtt 211  Q
    |||||||||||| ||||||||||||||||||||||| | ||||| ||||| || |||||||||  | ||||||||||||| |||||||||||||||||||    
T  45778674 cacactatatatcttcccctcatcatcttcaacctcgtaagaatgcaaatttgctgttcacta--accaagagactacaacccatcttcatcaagttgtt 45778577  T
Q  212 cttaaaa 218  Q
    |||||||    
T  45778576 cttaaaa 45778570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 45773088 - 45772881
Alignment:
Q  12 ggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagttt--tttgtaccattagattaaaagaggagcatagattttacgatggtctg 109  Q
    |||| |||||||||||||||| || | || ||| ||||||||| |||||||  ||| |||||||  |||||| || |||||| |||||||| || |||||    
T  45773088 ggtggagtttcacatggaaaatgtgattcattttccaccatgaaaaagtttattttttaccatttaattaaa-gaagagcatggattttaccatagtctg 45772990  T
Q  110 cccacactatatattttcccctcatcatcttcaacctcatgagaatccaaatatgttgttcactactagcaagagactacaatccatcttcatcaagttg 209  Q
    || |||||||||||||||||||||||||||||| |||||||| ||| ||||| ||   || || || | |||||||||||||||||||||||||||||||    
T  45772989 cctacactatatattttcccctcatcatcttcagcctcatgaaaatgcaaatctgcaatttaccaccaccaagagactacaatccatcttcatcaagttg 45772890  T
Q  210 ttcttaaaa 218  Q
    |||||||||    
T  45772889 ttcttaaaa 45772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 52870195 - 52870072
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacact 117  Q
    |||||||||| |||||| |||||||| ||| |||| ||||||||||| | |||||||||||| | || || ||||||||||| |||||||   | |||||    
T  52870195 tttcacatgggaaaggtgaatccttttccatcatgggaaagtttttttttaccattagattaga-gatgaacatagattttatgatggtcaatctacact 52870097  T
Q  118 atatattttcccctcatcatcttca 142  Q
    ||||||||| |||||||||||||||    
T  52870096 atatatttttccctcatcatcttca 52870072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 40847684 - 40847726
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40847684 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 40847726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 38709644 - 38709481
Alignment:
Q  60 ttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaacctcatgagaatccaa 159  Q
    |||||| ||||||||||||||| ||| | ||||||||||| |||||||   |||||||||||| |||||| |||||||||||||| | || | ||| |||    
T  38709644 ttttttttaccattagattaaa-gagaaacatagattttatgatggtcaatccacactatatactttcccatcatcatcttcaacttgataaaaatgcaa 38709546  T
Q  160 atatgttgttcactactagcaagagactacaatc------catcttcatcaagttgttcttaaaa 218  Q
    || ||   ||||| || | ||||||||| |||||      |||||||||||| ||||||||||||    
T  38709545 atctgcaattcaccaccaccaagagactgcaatctatacacatcttcatcaatttgttcttaaaa 38709481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 198164 - 198225
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagttttttgt-accattagattaaaag 83  Q
    ||||||||||||| |||| ||| |||||||||||||||||||| | ||||||||||||||||    
T  198164 acatggaaaaggtgaatctttttccaccatgagaaagttttttctaaccattagattaaaag 198225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 55874691 - 55874644
Alignment:
Q  114 cactatatattttcccctcatcatcttcaacctcatgagaatccaaat 161  Q
    |||||||||||||||||||||||||||||||| ||||| ||| |||||    
T  55874691 cactatatattttcccctcatcatcttcaaccccatgaaaatgcaaat 55874644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 199305 - 199263
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  199305 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 199263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 388760 - 388802
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  388760 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 388802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 32894699 - 32894615
Alignment:
Q  60 ttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaacct 146  Q
    |||||| |||||| |||||||| |||| ||| ||||||||  |||||||| |||||| ||||||||||| | |||||||||||||||    
T  32894699 ttttttttaccataagattaaa-gaggtgcacagattttaaaatggtctgtccacaccatatattttcctc-catcatcttcaacct 32894615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 49347212 - 49347128
Alignment:
Q  60 ttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaacct 146  Q
    |||||| |||||| |||||||| |||| ||| ||||||||  |||||||| |||||| ||||||||||| | |||||||||||||||    
T  49347212 ttttttttaccataagattaaa-gaggtgcacagattttaaaatggtctgtccacaccatatattttcctc-catcatcttcaacct 49347128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 199007 - 199048
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  199007 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 199048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 20075533 - 20075574
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  20075533 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 20075574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 26423767 - 26423808
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  26423767 ttcacatgggaaaggttaatcctttcccaccatgaaaaagtt 26423808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 55816528 - 55816487
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  55816528 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 55816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 20422139 - 20422178
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaag 59  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  20422139 ttcacatgggaaaggttaatcctttcccaccatgggaaag 20422178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 2713922 - 2713888
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  2713922 tttcacatgggaaaggttaatcctttcccaccatg 2713888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12639972 - 12640014
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  12639972 tttcacatgggaaaggttaatccttttccaccatgggaaagtt 12640014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 18501746 - 18501780
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  18501746 tttcacatgggaaaggttaatcctttcccaccatg 18501780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 25370467 - 25370429
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  25370467 acatgggaaaggttaatcctttcccaccatgggaaagtt 25370429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 33570355 - 33570313
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||    
T  33570355 tttcacatggaaaaggtcaatccttttccaccataagaaagtt 33570313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 36111294 - 36111256
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaa 58  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  36111294 ttcacatgggaaaggttaatcctttcccaccatgggaaa 36111256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 37275117 - 37275202
Alignment:
Q  41 ctttcccaccatgagaaag-ttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatatttt 126  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| ||| ||| ||| |||| || | ||| ||||||||||| ||||    
T  37275117 ctttcccaccatgagaaagtttttttaaaccattagattaaaag-ggaacattgatcttactatagactgtccacactatatgtttt 37275202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 55815832 - 55815874
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||| ||| |||||||    
T  55815832 tttcacatgggaaaggttaatcctttcccactatgggaaagtt 55815874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 389483 - 389450
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatg 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  389483 ttcacatgggaaaggttaatcctttcccaccatg 389450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 12640664 - 12640623
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||| ||||||||||||||||||| |||||||    
T  12640664 ttcacatgggaaagcttaatcctttcccaccatgggaaagtt 12640623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 33758166 - 33758101
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgt-accattagattaaaag 83  Q
    |||||||||| |||||| |||||||||||||||||  || ||||||| | ||||| ||||||||||    
T  33758166 tttcacatgggaaaggtcaatcctttcccaccatggaaatgttttttttaaccatcagattaaaag 33758101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 35428279 - 35428238
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagt 60  Q
    ||||| |||| |||||||||||||||||||||||| ||||||    
T  35428279 tttcagatgggaaaggttaatcctttcccaccatgggaaagt 35428238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 36945301 - 36945260
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||||||| |||||||| |||||||    
T  36945301 ttcacatgggaaaggttaatccttttccaccatgggaaagtt 36945260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 48090474 - 48090515
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||| ||||||||||| |||||||    
T  48090474 ttcacatgggaaaggttaatccattcccaccatgggaaagtt 48090515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 52597498 - 52597539
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  52597498 ttcacatgggaaaggttaatcttttcccaccatgggaaagtt 52597539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 52869455 - 52869496
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||| ||||||||||||||||| |||||||    
T  52869455 ttcacatgggaaaggtgaatcctttcccaccatgggaaagtt 52869496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 41828942 - 41828737
Alignment:
Q  12 ggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcc 111  Q
    |||| |||||||||||  ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  41828942 ggtggagtttcacatgagaaaggttaatctttttccatcatgagaaagttttttgtaccattagattaaaataggatcatagattttacgattgtctgcc 41828843  T
Q  112 cacactatatattttcccctcatcatcttcaacctcatgagaatccaaatatgttgttcactactagcaagagactacaatccatcttcatcaagttgtt 211  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41828842 cacactatatattttcccctcatcatcttcaacctcgtgagaatgcaaatatgttgtt-actactagcaagagactacaatccatcttcatcaagttgtt 41828744  T
Q  212 cttaaaa 218  Q
    |||||||    
T  41828743 cttaaaa 41828737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 34666823 - 34666983
Alignment:
Q  60 ttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaacctcatgagaatccaa 159  Q
    |||||| ||| |||||||||||    |||||||||||||| |||||| |||| ||| |||||||||||| |||||||||||||||||  ||||||| |||    
T  34666823 ttttttttactattagattaaa----gagcatagattttatgatggtatgcctacattatatattttccactcatcatcttcaaccttgtgagaatgcaa 34666918  T
Q  160 atatgttgttcactactagcaagagactaca------atccatcttcatcaagttgttcttaaaa 218  Q
     | ||   ||||| || |  |||||||||||      |||||||||||||||||| |||||||||    
T  34666919 ctctgcaattcaccaccactaagagactacaatccatatccatcttcatcaagttattcttaaaa 34666983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 41828198 - 41828237
Alignment:
Q  179 caagagactacaatccatcttcatcaagttgttcttaaaa 218  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  41828198 caagatactacaatccatcttcatcaagttgttcttaaaa 41828237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 7818481 - 7818523
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  7818481 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 7818523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 33114267 - 33114225
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  33114267 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 33114225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 35237266 - 35237308
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  35237266 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 35237308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 43481359 - 43481318
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  43481359 ttcacatgaaaaaggttaatcctttcccaccatgggaaagtt 43481318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 43591015 - 43591056
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  43591015 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 43591056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 37532583 - 37532618
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatga 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  37532583 tttcacatgggaaaggttaatcctttcccaccatga 37532618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 39852161 - 39852204
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagttt 62  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||    
T  39852161 tttcaaatgggaaaggttaatcctttcccaccatgggaaagttt 39852204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 11999159 - 11999117
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||| |||||||||||| |||||||    
T  11999159 tttcacatgggaaaggttaatcatttcccaccatgggaaagtt 11999117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 16889202 - 16889244
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||| |||||||||||| |||||||    
T  16889202 tttcacatgggaaaggttaatcttttcccaccatgggaaagtt 16889244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 27322555 - 27322501
Alignment:
Q  92 agattttacgatggtctgcccacactatatattttcccctcatcatcttcaacct 146  Q
    |||||||||||| |||   | |||||||||||||||||| |||||||||||||||    
T  27322555 agattttacgatagtcaatcaacactatatattttccccacatcatcttcaacct 27322501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 38573141 - 38573095
Alignment:
Q  7 aaataggtgaagtttcacatggaaaaggttaatcctttcccaccatg 53  Q
    ||||||||| ||||| |||||| |||||| |||||||||||||||||    
T  38573141 aaataggtggagtttaacatgggaaaggtgaatcctttcccaccatg 38573095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 41761806 - 41761840
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  41761806 tttcacatgggaaaggttaatcctttcccaccatg 41761840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 11998464 - 11998505
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  11998464 ttcacatgggaaaggttaatcatttcccaccatgggaaagtt 11998505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 16880596 - 16880555
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||| ||||||||||||||||||| |||||||    
T  16880596 ttcacatgggaaagattaatcctttcccaccatgtgaaagtt 16880555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 30116074 - 30116033
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||||||| |||||||| |||||||    
T  30116074 ttcacatgggaaaggttaatccttttccaccatgggaaagtt 30116033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 40907607 - 40907648
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||| | |||||||    
T  40907607 ttcacatgggaaaggttaatcctttcccaccacgggaaagtt 40907648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 10199142 - 10199098
Alignment:
Q  9 ataggtgaagtttcacatggaaaaggttaatcctttcccaccatg 53  Q
    ||||||| ||||| |||||| |||||| |||||||||||||||||    
T  10199142 ataggtggagtttaacatgggaaaggtgaatcctttcccaccatg 10199098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 35237941 - 35237909
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccat 52  Q
    ||||||||| |||||||||||||||||||||||    
T  35237941 ttcacatgggaaaggttaatcctttcccaccat 35237909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 37533355 - 37533323
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccat 52  Q
    ||||||||| |||||||||||||||||||||||    
T  37533355 ttcacatgggaaaggttaatcctttcccaccat 37533323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 23632941 - 23633054
Alignment:
Q  30 aaaggttaatcctttcccaccatgagaaagttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttccc 129  Q
    ||||| ||||||||||||||||||  |||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||  | |||||||||    
T  23632941 aaaggctaatcctttcccaccatggaaaagttttttttaccattagatt-aaagaggagtatagattttatgatggtctgcccacac--tttattttccc 23633037  T
Q  130 ctcatcatcttcaacct 146  Q
    |||||||||||||||||    
T  23633038 ctcatcatcttcaacct 23633054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 85128 - 85005
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacact 117  Q
    |||||||||| |||||| |||||||||||||||||  |||||||||| | |||||||||||| | || || ||||||||||| |||||||  || |||||    
T  85128 tttcacatgggaaaggtgaatcctttcccaccatggaaaagtttttttttaccattagattaga-gatgaacatagattttatgatggtcaacctacact 85030  T
Q  118 atatattttcccctcatcatcttca 142  Q
    ||||||||| |||||||||||||||    
T  85029 atatatttttccctcatcatcttca 85005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 39146846 - 39146921
Alignment:
Q  67 taccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaacc 145  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||||||||||  | |||||||||||||||||||||||||    
T  39146846 taccattagattaaa-gaggagtatagattttatgatagtctgcccacac--tttattttcccctcatcatcttcaacc 39146921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 41713839 - 41713735
Alignment:
Q  46 ccaccatgagaaagttttttgta-ccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaac 144  Q
    |||||||||||||||||||| || |||| ||||||||  ||| ||| ||||||||| |||  |||||||||| |||||||||||||  ||| ||||||||    
T  41713839 ccaccatgagaaagttttttctaaccataagattaaat-aggtgcacagattttaccatgacctgcccacaccatatattttccccatatcttcttcaac 41713741  T
Q  145 ctcatg 150  Q
    ||||||    
T  41713740 ctcatg 41713735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 24044121 - 24044078
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtttt 63  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  24044121 ttcacatgggaaaggttaatcctttcccaccatgggaaagtttt 24044078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 27855573 - 27855615
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  27855573 tttcacatgggaaaggttaatcatttcccaccatgagaaagtt 27855615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 19816272 - 19816313
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  19816272 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 19816313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 22275433 - 22275474
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  22275433 ttcacatggaaaaggttaatcatttcccaccatgggaaagtt 22275474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 34853399 - 34853440
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  34853399 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 34853440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 36683542 - 36683501
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  36683542 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 36683501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 42456594 - 42456553
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  42456594 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 42456553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 45026323 - 45026371
Alignment:
Q  37 aatcctttcccaccatgagaaagttttttgtaccattagattaaaagag 85  Q
    |||||||||||||||||||||||||||||  || |||||||| ||||||    
T  45026323 aatcctttcccaccatgagaaagtttttttaacaattagattgaaagag 45026371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 12924214 - 12924161
Alignment:
Q  60 ttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccac 114  Q
    |||||| |||||||| |||||| |||||| |||||||||| ||||||||||||||    
T  12924214 ttttttttaccattaaattaaa-gaggagtatagattttatgatggtctgcccac 12924161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 22276151 - 22276113
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  22276151 acatgggaaaggttaatcctttcccaccatgggaaagtt 22276113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 34854075 - 34854033
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||  |||||||    
T  34854075 tttcacatgggaaaggttaatcctttcccaccataggaaagtt 34854033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 36682842 - 36682884
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||| |||||||||||| |||||||    
T  36682842 tttcacatgggaaaggttaatcatttcccaccatgggaaagtt 36682884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 46814416 - 46814454
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  46814416 acatgggaaaggttaatcctttcccaccatgggaaagtt 46814454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 47814713 - 47814672
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||| ||||||||||||||||||| |||||||    
T  47814713 ttcacatgggaaagcttaatcctttcccaccatgggaaagtt 47814672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 48881097 - 48881068
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccat 52  Q
    ||||||||||||||||||||||||||||||    
T  48881097 acatggaaaaggttaatcctttcccaccat 48881068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 41712995 - 41713097
Alignment:
Q  42 tttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||| ||| ||| ||||||||||| | ||||| |||||||| |||| ||| ||||||||  |||||||  |||||| ||||||||||| | |||||||||    
T  41712995 tttctcactatgggaaagttttttcttaccataagattaaa-gaggtgcacagattttaaaatggtctctccacaccatatattttcctc-catcatctt 41713092  T
Q  141 caacc 145  Q
    |||||    
T  41713093 caacc 41713097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 42455928 - 42455960
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccacca 51  Q
    |||||||||| ||||||||||||||||||||||    
T  42455928 tttcacatgggaaaggttaatcctttcccacca 42455960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 39149510 - 39149390
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt-ttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacact 117  Q
    |||||||||| |||||| ||||||||||||||||| ||||||| |||| |||||||||||| | ||| || ||||||||||| ||||||   || |||||    
T  39149510 tttcacatgggaaaggtgaatcctttcccaccatgggaaagtttttttttaccattagatt-agagatgaacatagattttatgatggt---cctacact 39149415  T
Q  118 atatattttcccctcatcatcttca 142  Q
    ||||||||| |||||||||||||||    
T  39149414 atatatttttccctcatcatcttca 39149390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 6903316 - 6903185
Alignment:
Q  11 aggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctg 109  Q
    ||||| ||||| |||||| ||||  ||||||||| || ||||| ||||||||||| | | |||||||||||| |||||| |||||||||| |||||||||    
T  6903316 aggtggagtttaacatgggaaagactaatccttttcc-ccatgggaaagtttttttttatcattagattaaa-gaggagtatagattttatgatggtctg 6903219  T
Q  110 cccacactatatattttcccctcatcatcttcaacc 145  Q
    |||||||  | |||||||||||||||||||||||||    
T  6903218 cccacac--tttattttcccctcatcatcttcaacc 6903185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 4790236 - 4790132
Alignment:
Q  42 tttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    ||||||| |||| ||||||| ||| | ||||||| |||||| |||| | |||||||||| ||| ||||  | |||||||||||||||||| |||||||||    
T  4790236 tttcccatcatgggaaagttatttttgaccattaaattaaa-gaggtgtatagattttatgatagtctatcaacactatatattttccccacatcatctt 4790138  T
Q  141 caacct 146  Q
    ||||||    
T  4790137 caacct 4790132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 41785500 - 41785392
Alignment:
Q  42 tttcccaccatgagaaagttttttgta-ccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||| ||||| ||||||||||||| || |||| ||||||||  ||| ||| ||||||||| |||  ||| |||||| ||||||||||||| |||| ||||    
T  41785500 tttctcaccacgagaaagttttttctaaccataagattaaat-aggtgcacagattttaccatgacctgtccacaccatatattttccccacatcttctt 41785402  T
Q  141 caacctcatg 150  Q
    ||||||||||    
T  41785401 caacctcatg 41785392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 3957507 - 3957549
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  3957507 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 3957549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 25075074 - 25075034
Alignment:
Q  21 tcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  25075074 tcacatgggaaaggttaatcctttcccaccatgggaaagtt 25075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 25133043 - 25133003
Alignment:
Q  21 tcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  25133043 tcacatgggaaaggttaatcctttcccaccatgggaaagtt 25133003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 4929585 - 4929543
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  4929585 tttcacatgggaaaggttaatccttttccaccatgggaaagtt 4929543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 28076048 - 28076006
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||||||||||||||| ||| |||||||| |||||||    
T  28076048 tttcacatggaaaaggttaatcattttccaccatgggaaagtt 28076006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 33430050 - 33430084
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||||||||||||||||||||| ||||||    
T  33430050 tttcacatggaaaaggttaatcctttcctaccatg 33430084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 26688128 - 26688096
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccacca 51  Q
    |||||||||| ||||||||||||||||||||||    
T  26688128 tttcacatgggaaaggttaatcctttcccacca 26688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 26957859 - 26957827
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccacca 51  Q
    |||||||||| ||||||||||||||||||||||    
T  26957859 tttcacatgggaaaggttaatcctttcccacca 26957827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 29148958 - 29149090
Alignment:
Q  30 aaaggttaatcctttcccaccatgagaaagtttttt-gtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcc 128  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||| |||||| | |||| ||||||  |||||| ||| || |  |||||||| |    
T  29148958 aaaggttaatcctttcccaccatgggaaagttttttcctaccattagatt-aaagagcaacataaattttatcatggtcagcctacgc--tatatttttc 29149054  T
Q  129 cctcatcatcttcaacctcatgagaatccaaatatg 164  Q
    ||||||||||||||||||| ||| ||| ||||||||    
T  29149055 cctcatcatcttcaacctcgtgaaaatgcaaatatg 29149090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 51132327 - 51132219
Alignment:
Q  42 tttcccaccatgagaaagttttttgta-ccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||||||||||||||||||||||| || |||| ||||||||  ||| ||| ||||||||| |||  |||  ||||| ||||||||||||| |||| ||||    
T  51132327 tttcccaccatgagaaagttttttctaaccataagattaaat-aggtgcacagattttaccatgacctgttcacaccatatattttccccacatcttctt 51132229  T
Q  141 caacctcatg 150  Q
    ||||||||||    
T  51132228 caacctcatg 51132219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 1403047 - 1403089
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  1403047 tttcacatggaaaaggttaatcctttcccaccatgggaaagtt 1403089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 42838944 - 42838986
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  42838944 tttcacatggtaaaggttaatcctttcccaccatgggaaagtt 42838986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 27797125 - 27797158
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatg 53  Q
    ||||||||||||||||||||||||||||||||||    
T  27797125 ttcacatggaaaaggttaatcctttcccaccatg 27797158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 42839709 - 42839750
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  42839709 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 42839750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 1184973 - 1184930
Alignment:
Q  83 gaggagcatagattttacgatggtctgcccacactatatatttt 126  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||    
T  1184973 gaggagcatagatgttatgatggtctgtccacactatatatttt 1184930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 49534475 - 49534441
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  49534475 tttcacatgggaaaggttaatcctttcccaccatg 49534441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 1403765 - 1403724
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||| | |||||||||||||||||||||||| |||||||    
T  1403765 ttcacataggaaaggttaatcctttcccaccatgggaaagtt 1403724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 8560820 - 8560787
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatg 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  8560820 ttcacatgggaaaggttaatcctttcccaccatg 8560787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 43368913 - 43368872
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  43368913 ttcacatgggaaaggttaattctttcccaccatgggaaagtt 43368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 52859866 - 52859825
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||||||||| |||||| |||||||    
T  52859866 ttcacatgggaaaggttaatcctttccaaccatgggaaagtt 52859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 45611195 - 45611159
Alignment:
Q  17 agtttcacatggaaaaggttaatcctttcccaccatg 53  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  45611195 agtttaacatggaaaaggttaatccttttccaccatg 45611159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 51129403 - 51129505
Alignment:
Q  42 tttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||||||| ||| ||||||||||| | ||||| |||||||| |||| ||| ||||||||  |||||||  |||||| ||||||||||| | |||||| ||    
T  51129403 tttcccactatgggaaagttttttcttaccataagattaaa-gaggtgcacagattttaaaatggtctctccacaccatatattttcctc-catcatttt 51129500  T
Q  141 caacc 145  Q
    |||||    
T  51129501 caacc 51129505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 41040578 - 41040702
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagttttttgt--accattagattaaaagaggagcatagattttacgatggtctgcccacac 116  Q
    |||||||||| |||||| ||||||||| |||||||| |||||||||| |  |||||||||||| | || || ||||||||||| |||||||  || ||||    
T  41040578 tttcacatgggaaaggtgaatcctttctcaccatgaaaaagttttttttttaccattagattaga-gatgaacatagattttatgatggtcaacctacac 41040676  T
Q  117 tatatattttcccctcatcatcttca 142  Q
    |||||||||| ||||||| |||||||    
T  41040677 tatatatttttccctcattatcttca 41040702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 1127394 - 1127502
Alignment:
Q  42 tttcccaccatgagaaagttttttgta-ccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||||||||||||||||||||||| || |||| ||||||||  ||| ||| ||||||||| |||  |||||||||| ||||||||||||| |||| ||||    
T  1127394 tttcccaccatgagaaagttttttctaaccataagattaaat-aggtgcacagattttaccatgacctgcccacaccatatattttccccacatcttctt 1127492  T
Q  141 caacctcatg 150  Q
    ||||||||||    
T  1127493 caacctcatg 1127502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 41459138 - 41459179
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  41459138 ttcacatgggaaaggttaatcctttcccaccatgagaaagtt 41459179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 50687799 - 50687744
Alignment:
Q  7 aaataggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagttt 62  Q
    ||||||||||  |||||||||| |||||||||| ||||||||||||| ||||||||    
T  50687799 aaataggtgacatttcacatgggaaaggttaattctttcccaccatgggaaagttt 50687744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 3944902 - 3944944
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  3944902 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 3944944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 25025842 - 25025800
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagttt 62  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  25025842 ttcacatgggaaaggttaatcctttcccaccatgggaaagttt 25025800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 25025181 - 25025224
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagttt 62  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||    
T  25025181 tttcacatgggaaaggttaatcctttcccatcatgggaaagttt 25025224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 53269436 - 53269393
Alignment:
Q  10 taggtgaagtttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||  |||||||||| ||||||||||||||||||||||||    
T  53269436 taggtgacatttcacatgggaaaggttaatcctttcccaccatg 53269393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 23584962 - 23584928
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  23584962 tttcacatgggaaaggttaatcctttcccaccatg 23584928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 23599785 - 23599751
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  23599785 tttcacatgggaaaggttaatcctttcccaccatg 23599751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 37375543 - 37375505
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  37375543 acatgggaaaggttaatcctttcccaccataagaaagtt 37375505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 44868696 - 44868658
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaa 58  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  44868696 ttcacatgggaaaggttaatcctttcccaccatgggaaa 44868658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 55281843 - 55281881
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaa 58  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  55281843 ttcacatgggaaaggttaatcctttcccaccatgggaaa 55281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 8427821 - 8427780
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||  ||||||||||||||||||||||| |||||||    
T  8427821 ttcacatggggaaggttaatcctttcccaccatgggaaagtt 8427780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 23584245 - 23584286
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| | |||||||||||||||||||||| |||||||    
T  23584245 ttcacatgggacaggttaatcctttcccaccatgggaaagtt 23584286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 23599068 - 23599109
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| | |||||||||||||||||||||| |||||||    
T  23599068 ttcacatgggacaggttaatcctttcccaccatgggaaagtt 23599109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 29342349 - 29342390
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  29342349 ttcacatgggaaaggttaatcttttcccaccatgggaaagtt 29342390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 38279417 - 38279458
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||| ||||||||||||||||| |||||||    
T  38279417 ttcacatgggaaaggtgaatcctttcccaccatgggaaagtt 38279458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 1128244 - 1128142
Alignment:
Q  42 tttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||| ||| ||| ||||||||||| | ||||| |||||||| |||| ||| ||||||||  |||||||  |||||| ||||||||||| | |||||||||    
T  1128244 tttctcactatgggaaagttttttcttaccataagattaaa-gaggtgcacagattttaaaatggtctctccacaccatatattttcctc-catcatctt 1128147  T
Q  141 caacc 145  Q
    |||||    
T  1128146 caacc 1128142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 12206785 - 12206837
Alignment:
Q  9 ataggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  12206785 ataggtgacatttcacatgggaaaggttaatcctttcccaccatgagaaagtt 12206837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 17947935 - 17947851
Alignment:
Q  60 ttttttgtaccattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaacct 146  Q
    |||||| |||||| |||||||| |||| ||||||||||||  |||||||| |||||| ||||||||||| | |||||||||||||||    
T  17947935 ttttttttaccataagattaaa-gaggtgcatagattttaaaatggtctgtccacaccatatattttcctc-catcatcttcaacct 17947851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 32471950 - 32472010
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagttttttgt-accattagattaaaa 82  Q
    |||||| ||||||  |||||||||||||||| ||||||||||||| |||||||||||||||    
T  32471950 acatgggaaaggtggatcctttcccaccatgggaaagttttttgtaaccattagattaaaa 32472010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 4387052 - 4386997
Alignment:
Q  6 taaataggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||||   |||||||||| |||||||||||||||||||||||| |||||||    
T  4387052 taaataggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagtt 4386997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 6849617 - 6849579
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6849617 acatggaaaaggttaatcctttcccaccatgggaaagtt 6849579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 9224273 - 9224315
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  9224273 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 9224315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 16571125 - 16571167
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  16571125 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 16571167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 6849296 - 6849337
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  6849296 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 6849337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 10883295 - 10883336
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  10883295 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 10883336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 28224466 - 28224425
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  28224466 ttcacatgggaaaggttaatcctttcccaccatgggaaagtt 28224425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 18950574 - 18950534
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaag 59  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  18950574 tttcatatggaaaaggttaatcctttcccaccatgggaaag 18950534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 7583140 - 7583178
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaa 58  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  7583140 ttcacatcggaaaggttaatcctttcccaccatgagaaa 7583178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 7716678 - 7716720
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||| |||||||||||||||||||| |||||||    
T  7716678 tttcacatgggaaatgttaatcctttcccaccatgggaaagtt 7716720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 8113379 - 8113337
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  8113379 tttcacatgggaaaggttaatccttttccaccatgggaaagtt 8113337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 11256815 - 11256777
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  11256815 acatggaaaaggttaatcattttccaccatgagaaagtt 11256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 16903164 - 16903126
Alignment:
Q  23 acatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  16903164 acatgggaaaggttaatccttttccaccatgagaaagtt 16903126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 20244250 - 20244216
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatg 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  20244250 tttcacatgggaaaggttaatcctttcccaccatg 20244216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 28223795 - 28223837
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||  |||||||    
T  28223795 tttcacatgggaaaggttaatcctttcccaccataggaaagtt 28223837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 43743881 - 43743835
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtttttt 65  Q
    |||||||||| |||||| ||||||||||||||||| |||| ||||||    
T  43743881 tttcacatgggaaaggtgaatcctttcccaccatgggaaactttttt 43743835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 3595254 - 3595295
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  3595254 ttcacatgggaaaggttaattctttcccaccatgggaaagtt 3595295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 7717362 - 7717321
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||| ||||||| |||||||    
T  7717362 ttcacatgggaaaggttaatcctttctcaccatgggaaagtt 7717321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 14565263 - 14565214
Alignment:
Q  9 ataggtgaagtttcacatggaaaaggttaatcctttcccaccatgagaaa 58  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||||| ||||    
T  14565263 ataggtggagtttaacatgggaaaggtgaatcctttcccaccatgggaaa 14565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 16887591 - 16887624
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatg 53  Q
    ||||||||| ||||||||||||||||||||||||    
T  16887591 ttcacatgggaaaggttaatcctttcccaccatg 16887624  T

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Target: scaffold0229 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 15312 - 15270
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  15312 tttcacatggaaaaggttaatcctttcccaccatgggaaagtt 15270  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 1529429 - 1529328
Alignment:
Q  42 tttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||||||||||||||||||||||| | ||||| ||||||||  ||| ||| ||||||||| |||  ||| |||||| ||||||||||||| |||| ||||    
T  1529429 tttcccaccatgagaaagttttttctgaccataagattaaat-aggtgcacagattttaccatgacctgtccacaccatatattttccccacatcttctt 1529331  T
Q  141 caa 143  Q
    |||    
T  1529330 caa 1529328  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 13936719 - 13936677
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  13936719 tttcacatgggaaaggttaatcctttcccaccatgggaaagtt 13936677  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 33668228 - 33668270
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| ||||||||||| |||||||||||| |||||||    
T  33668228 tttcacatgggaaaggttaatcatttcccaccatgggaaagtt 33668270  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 6032166 - 6032207
Alignment:
Q  20 ttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    ||||||||| |||||||||||||||||||| ||| |||||||    
T  6032166 ttcacatgggaaaggttaatcctttcccactatgggaaagtt 6032207  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 1528591 - 1528693
Alignment:
Q  42 tttcccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatctt 140  Q
    |||||||| ||| ||||||||||| | ||||| |||||||| |||| ||| ||||||||  |||||||  |||||| ||||||||||| | |||||| ||    
T  1528591 tttcccactatgggaaagttttttcttaccataagattaaa-gaggtgcacagattttaaaatggtctatccacaccatatattttcctc-catcatatt 1528688  T
Q  141 caacc 145  Q
    |||||    
T  1528689 caacc 1528693  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 18483137 - 18483039
Alignment:
Q  46 ccaccatgagaaagttttttgt-accattagattaaaagaggagcatagattttacgatggtctgcccacactatatattttcccctcatcatcttcaac 144  Q
    |||| ||| ||||||||| ||| ||||| |||||||| || | ||| | ||||||  |||||||| |||||| ||||||||||||| |||||||||||||    
T  18483137 ccactatgggaaagttttatgttaccataagattaaa-gatgtgcacaaattttaaaatggtctgtccacaccatatattttcccc-catcatcttcaac 18483040  T

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Target: scaffold0368 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 11863 - 11821
Alignment:
Q  19 tttcacatggaaaaggttaatcctttcccaccatgagaaagtt 61  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  11863 tttcacatggtaaaggttaatcctttcccaccatgggaaagtt 11821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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