View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_8 (Length: 533)

Name: NF5786_low_8
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_8
NF5786_low_8
[»] chr5 (23 HSPs)
chr5 (310-525)||(11048013-11048244)
chr5 (9-278)||(10605301-10605571)
chr5 (9-294)||(10746406-10746683)
chr5 (9-294)||(10581544-10581830)
chr5 (9-294)||(10565552-10565838)
chr5 (9-278)||(10612259-10612529)
chr5 (9-294)||(10739800-10740086)
chr5 (9-278)||(10762231-10762501)
chr5 (9-292)||(10716365-10716637)
chr5 (46-287)||(7193592-7193834)
chr5 (9-296)||(10659458-10659746)
chr5 (39-276)||(9827352-9827590)
chr5 (39-276)||(9835721-9835959)
chr5 (39-252)||(10651619-10651833)
chr5 (9-90)||(11048241-11048322)
chr5 (115-211)||(10760796-10760892)
chr5 (141-251)||(10587895-10588005)
chr5 (188-292)||(19605243-19605347)
chr5 (190-293)||(10559629-10559732)
chr5 (178-264)||(10551520-10551606)
chr5 (12-118)||(10588010-10588117)
chr5 (351-414)||(10565949-10566012)
chr5 (234-291)||(9849623-9849680)
[»] chr6 (5 HSPs)
chr6 (9-278)||(12958606-12958876)
chr6 (9-278)||(12907718-12907988)
chr6 (9-278)||(12900098-12900371)
chr6 (9-278)||(12932807-12933077)
chr6 (9-278)||(12949161-12949417)
[»] chr2 (1 HSPs)
chr2 (9-278)||(17922808-17923078)
[»] scaffold0692 (1 HSPs)
scaffold0692 (9-108)||(7821-7921)
[»] chr3 (1 HSPs)
chr3 (178-278)||(31466548-31466648)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 310 - 525
Target Start/End: Complemental strand, 11048244 - 11048013
Alignment:
Q  310 gatacttgacactttttctcctcattaattgattgcatatcaaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttc 409  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11048244 gatacttaacactttttctcctcattaattgattgcatatcaaaatttctaacctacaaaatacaaaggcaataacaagcttcctcttgatttgaatttc 11048145  T
Q  410 aggtgttcac----------------actaaatttataaggtcatttgtgggagaagaagtgtctagctggaagcgtgtatgagtgtgttcaatgaattt 493  Q
    ||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11048144 aggtgttcacactcataagtaattgaactaaatttataaggtcatttgtgggagaagaagtgtctagctggaagcgtgtatgagtgtgttcaatgaattt 11048045  T
Q  494 ggtttgcaacattaaattatgtgtgatgatgt 525  Q
    ||||||||| ||||||||||||||||| ||||    
T  11048044 ggtttgcaagattaaattatgtgtgattatgt 11048013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 10605301 - 10605571
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaac-gattttgg 107  Q
    ||||| ||||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||    
T  10605301 cttactggtaggagacccactgatgaagtttttcaagatggtcaaaatctgcataactttgttgcaacttcatttcctgataatattaaagagattttgg 10605400  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    ||| ||  ||| || |||||||||||||||||||||||||| ||| |||   |  |||||||| |||||| |||||||| | ||||||||||||||||||    
T  10605401 acccacaccttgtaacaagagatgtagaagtagcaatagaaaatggaaaccatacgaatcttattccaagggtagaggaatccttagtttcactttttag 10605500  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
     ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  10605501 aattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactaaagagctta 10605571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 10746683 - 10746406
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||  || ||||    
T  10746683 cttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttgg 10746584  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    |||  | |||| |||||||||||| ||         ||||||||| |||   ||||||||||| ||||| |||| | ||||| |||||||||||||||||    
T  10746583 acccgcatcttctatcaagagatgcag---------tagaagatggaaacaatgagaatcttattccaactgtaaaagagtgtttagtttcactttttag 10746493  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 294  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  10746492 gattggacttatttgtacaattgaatcaccaaaagaaagaatgaatactgtggatgtcactagagagctcaacataatcagaaaggc 10746406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 10581544 - 10581830
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaa-acgattttgg 107  Q
    |||||||||||||||||| || || | | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |  |||||||    
T  10581544 cttaccggtagaagacccactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaatatcatttcctgctaatcttaagaaaattttgg 10581643  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    ||| || |||| ||||||| || | |||||||| ||| ||||||| ||||  ||||||||||| ||||  || | |||||||||||||||||||||||||    
T  10581644 acccacatcttttatcaagggacgcagaagtagaaatggaagatggaaatcttgagaatcttattccagctgcaaaggagtgcttagtttcactttttag 10581743  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 294  Q
    |||||||||||| ||| ||||||| ||||||||||||||| ||||||||| ||||||   || ||||||||| ||||||||||||||    
T  10581744 gattggacttatgtgttcaatggagtcaccaaaagaaagactgaatattgaggatgtatgtatagagcttagtataatcagaaaggc 10581830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 10565552 - 10565838
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaa-acgattttgg 107  Q
    |||||||||||||||||| || || | | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||    
T  10565552 cttaccggtagaagacccactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaatatcatttcctggtaatcttaagaagattttgg 10565651  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    ||| || |||| ||||||  |||| |||||| | |||  |||||| ||||  ||||||||||| ||||  || | |||||||||||||||||||||||||    
T  10565652 acccacatcttttatcaatggatgcagaagttgaaatgaaagatggaaatcatgagaatcttattccacctgcaaaggagtgcttagtttcactttttag 10565751  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 294  Q
    |||||||||||| ||| ||||||| ||||||||||||||||| || |||| || |||   |||||||||||| ||||||||||||||    
T  10565752 gattggacttatgtgttcaatggagtcaccaaaagaaagaatcaacattgaggttgtatgtagagagcttagtataatcagaaaggc 10565838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 10612259 - 10612529
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    |||||||||||||||||| || |||| |  |||||||||| ||||||||| ||||||||||||||||     ||||||| |||||||| || ||| ||||    
T  10612259 cttaccggtagaagacccactgatgaggcatttgaagatgatcaaaatctacataactttgttgcaacactgtttcctgctaatcttataaagatcttgg 10612358  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    ||| || |||| | |||| | ||| |||||||| |||| |||||| |||  |||||||||||| ||||||| || |||||||||||||||||||||||||    
T  10612359 acccacatcttgtgtcaaaatatgcagaagtagaaatacaagatggaaagagtgagaatcttattccaagtttaaaggagtgcttagtttcactttttag 10612458  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  10612459 gattggacttctttgttcaatggaatcacccaaagaaagaatgaatattgtggatgttactagagaactta 10612529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 10740086 - 10739800
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaac-gattttgg 107  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||||| |||| ||| ||||||| |||  ||| |  ||||||||    
T  10740086 cttaccggtagaagacccactgatgaagtttttcaagatggtcaaaatctacataactttgtagcaacttcgtttcctggtaacattatagagattttgg 10739987  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    ||| || ||||  | ||||||||||||||||| ||||| |||||| |||  | | || |||   |||  | |||||||| | ||||||||||||||||||    
T  10739986 acccacatcttgaagcaagagatgtagaagtaacaatacaagatggaaaccgagcgattctagttcctggggtagaggaatccttagtttcactttttag 10739887  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc 294  Q
     ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | |  |||||||| || |||| |||||||    
T  10739886 aattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttaatcaagagcttaacacaatccgaaaggc 10739800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 10762501 - 10762231
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaacg-attttgg 107  Q
    ||||| |||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||| |||  ||| |   |||||||    
T  10762501 cttactggtagaagacccactgatgaagtttttcaagatggtcaaaatctgcataactttgtagcagcttcatttcctggtaacattatagatattttgg 10762402  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    ||| || ||||  | ||||||||||||||||| ||| | |||||| |||  | | || ||||| | || | |||||||| | ||||||||||||||||||    
T  10762401 acccacatcttgaagcaagagatgtagaagtaacaaaacaagatggaaaccgagcgattcttattgcaggggtagaggaatccttagtttcactttttag 10762302  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
     ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  10762301 aattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactcaagagctta 10762231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 10716637 - 10716365
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    |||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||||| || ||||||||    
T  10716637 cttaccggtagaagacccactgatgaattttttcaagatggtcaaaatctgcataactttgttgcatcttcatttcctgacaatcttataaagattttgg 10716538  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    | | || |||| |||||||||||| |||||     || ||||   |       |||||||||| |||    ||| | || ||||||||||| ||||| ||    
T  10716537 atccacatcttgtatcaagagatgcagaag-----atggaagcata-------gagaatcttattcctgcggtaaatgaatgcttagtttctcttttcag 10716450  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaag 292  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  10716449 gattggacttgtttgtacaatggaatcaccgatagaaagaatgaatattatggatgtcactagagagctcaacataatcagaaag 10716365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 46 - 287
Target Start/End: Original strand, 7193592 - 7193834
Alignment:
Q  46 atggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaacg-attttggaccgacgtcttatatcaagagatgtagaagtagcaat 144  Q
    ||||||||||||| | ||  ||||||| |||||| || ||| ||||||||| ||  |||||||||| |  |||| || ||||| || |||||| | ||||    
T  7193592 atggtcaaaatctacgtatttttgttgaaatttcgttgcctaataatcttatacatattttggacccaaatcttgtaccaagaaatatagaagcaacaat 7193691  T
Q  145 agaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaa 244  Q
    |||||||| |||  |||  ||| | | ||||| ||||||| ||||| ||||||||||||||||||||||||||  |||| || |||||||||||||||||    
T  7193692 agaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaa 7193791  T
Q  245 agaatgaatattgtggatgtcactagagagcttagcataatca 287  Q
    ||||||||||| ||||||||||  |||||  | ||||||||||    
T  7193792 agaatgaatatagtggatgtcatcagagacttaagcataatca 7193834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 10659746 - 10659458
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaac-gattttgg 107  Q
    |||||||| ||||||||  |  ||||| | |||||||| ||||||||||||||||  ||||||| ||||||||||||  ||||| ||  || ||||||||    
T  10659746 cttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatatttgttgaaatttcatttccaaataatattttacagattttgg 10659647  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    ||| || |||| || ||||| ||| |||||    ||||||||| | |||  |||  ||| |   |||||  |||||| |||||||||||||||||||| |    
T  10659646 acccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttccctccaatcgtagagaagtgcttagtttcactttttcg 10659547  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggcat 296  Q
    ||||||||||   ||| || || ||||||||||||||||||||||||| || |||||||| |||||| | |||||||||| ||||||||    
T  10659546 gattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgtcaccagagagttaagcataatcaaaaaggcat 10659458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 9827590 - 9827352
Alignment:
Q  39 tttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaac-gattttggaccgacgtcttatatcaagagatgtagaag 137  Q
    ||||| |||||||||||||| | ||  |||| || || ||||||  |||||||||||  || ||||||| ||| || | || || ||||||||| |||||    
T  9827590 tttgaggatggtcaaaatctacgtacgtttgctgaaagttcattagctgataatctttcacagattttgaaccaacattttgtaccaagagatgaagaag 9827491  T
Q  138 tagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcacc 237  Q
     |||||||||||||| |||| |||||||||||| ||||  |||| || | |||||||||||| |||| ||||||||||||   ||| |||  ||||||||    
T  9827490 cagcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcacc 9827391  T
Q  238 aaaagaaagaatgaatattgtggatgtcactagagagct 276  Q
    ||||||||||||||| || || ||||| |||||||||||    
T  9827390 aaaagaaagaatgaacatagtagatgttactagagagct 9827352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 9835959 - 9835721
Alignment:
Q  39 tttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaac-gattttggaccgacgtcttatatcaagagatgtagaag 137  Q
    ||||| |||||||||||||| | ||  |||| || || ||||||  ||| |||||||  || ||||||||||| || | || || ||||||||| |||||    
T  9835959 tttgaggatggtcaaaatctacgtacgtttgctgaaagttcattagctggtaatctttcacagattttggaccaacattttgtaccaagagatgaagaag 9835860  T
Q  138 tagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcacc 237  Q
     |||||||||||||| |||| |||||||||||| ||||  |||| || | |||||||||||| |||| ||||||||||||   ||| |||  ||||||||    
T  9835859 cagcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcacc 9835760  T
Q  238 aaaagaaagaatgaatattgtggatgtcactagagagct 276  Q
    ||||||||||||||| || || ||||| |||||||||||    
T  9835759 aaaagaaagaatgaacatagtagatgttactagagagct 9835721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 10651833 - 10651619
Alignment:
Q  39 tttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaac-gattttggaccgacgtcttatatcaagagatgtagaag 137  Q
    |||||||| ||||||||| ||||||  ||||||| ||||||||||||| ||||| ||| || ||||||||| | || |||| || ||||| ||| |||||    
T  10651833 tttgaagaaggtcaaaatttgcatatgtttgttggaatttcatttcctaataatattatacagattttggatccacatcttgtaccaagaaatgaagaag 10651734  T
Q  138 tagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcacc 237  Q
     || ||||||||| | ||| ||||  ||| | | ||||| ||||||| |||| |||||||||||||| ||||||||||||  |||| || || |||||||    
T  10651733 aagaaatagaagaaggaaactgtggaaatttcactccaactgtagagaagtgtttagtttcacttttcaggattggacttgcttgttcagtgaaatcacc 10651634  T
Q  238 aaaagaaagaatgaa 252  Q
    |||||||||||||||    
T  10651633 aaaagaaagaatgaa 10651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 11048322 - 11048241
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgata 90  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11048322 cttaccggtagaagacccacccatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcacttcctgata 11048241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 10760892 - 10760796
Alignment:
Q  115 tcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggatt 211  Q
    |||| |||||||||||||| |||||| |||| |||||| |||   || |||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  10760892 tcttgtatcaagagatgtaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggatt 10760796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 10588005 - 10587895
Alignment:
Q  141 caatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaa 240  Q
    |||||||||||| | ||  ||||||||||| ||||  |   ||| ||||||||||||||||| | ||||||||||||  |||| ||||||||||||||||    
T  10588005 caatagaagatggacataatgagaatcttattccagctaaggagaagtgcttagtttcacttctaaggattggacttgcttgttcaatggaatcaccaaa 10587906  T
Q  241 agaaagaatga 251  Q
    |||||||||||    
T  10587905 agaaagaatga 10587895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 19605347 - 19605243
Alignment:
Q  188 tgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatca 287  Q
    ||||| |||||  |||||||||||||||||   ||| | |||||||| || ||||||||||||||||| |  |||| |||||||||||| | ||||||||    
T  19605347 tgctttgtttccatttttaggattggacttgcctgttcgatggaatctcccaaagaaagaatgaatatagaagatgccactagagagctaaacataatca 19605248  T
Q  288 gaaag 292  Q
    |||||    
T  19605247 gaaag 19605243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 10559629 - 10559732
Alignment:
Q  190 cttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcaga 289  Q
    |||||||||||| |||||||||||||||   ||| |  ||||||| |||| | |||||||||||||  |||||||||||||||| || | ||| ||||||    
T  10559629 cttagtttcactctttaggattggacttgcatgttcggtggaatcgccaacacaaagaatgaatatattggatgtcactagagaactaaacatgatcaga 10559728  T
Q  290 aagg 293  Q
    ||||    
T  10559729 aagg 10559732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 10551520 - 10551606
Alignment:
Q  178 tgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgt 264  Q
    ||||||| | || ||| |||||||| ||||||||| ||||  |||| || |||||||||||||||||||||||||||| || |||||    
T  10551520 tgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 10551606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 10588117 - 10588010
Alignment:
Q  12 accggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaac-gattttggacc 110  Q
    ||||| ||||||||| |  ||||| | |||||||||||||||||||| ||||  ||||||| || ||||||||  |||||||||| || |||||||||||    
T  10588117 accggaagaagacccacagatgaaatgtttgaagatggtcaaaatctacatatgtttgttgaaagttcatttcaagataatcttatacagattttggacc 10588018  T
Q  111 gacgtctt 118  Q
     || ||||    
T  10588017 cacatctt 10588010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 10565949 - 10566012
Alignment:
Q  351 aaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttcaggtg 414  Q
    ||||||||||| ||||||||||||| || ||||| |   ||| |||||||||||||||||||||    
T  10565949 aaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtg 10566012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 9849680 - 9849623
Alignment:
Q  234 caccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaa 291  Q
    |||| |||| |||||||||||   ||||||||||||||||||| | ||||||||||||    
T  9849680 caccgaaagcaagaatgaatacaatggatgtcactagagagctaaacataatcagaaa 9849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 7e-75; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 12958606 - 12958876
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    ||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | || ||| ||||    
T  12958606 cttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaaattcatttcctgataatctaataaagatgttgg 12958705  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    | | || |||| || |||||| || ||| | ||||| |||||||| ||||  ||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  12958706 atccacatcttttaccaagagctgaagatggagcaagagaagatggaaatcatgagattcttattccaactgtagaggagtgcttagtttcactttttag 12958805  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
    |||||||||| | ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12958806 gattggacttttatgttcattggaatcaccaaaagaaagaatgaatattgtcgatgtcactagagagctta 12958876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 12907718 - 12907988
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    ||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  12907718 cttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttgg 12907817  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    | | || |||| || |||||| || ||||| || ||||||||||| || |  ||||| ||||| ||||| ||||||||||||||||  ||||||||||||    
T  12907818 atccacatcttttaccaagagctgaagaaggaggaatagaagatggaattcatgagattcttattccaaatgtagaggagtgcttaacttcactttttag 12907917  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  12907918 gattggacttttatgttcattggaatcaacaaaagaaagaatgaatattgtagatgtcaatagagagctta 12907988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 12900098 - 12900371
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    ||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  12900098 cttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttgg 12900197  T
Q  108 accgacgtcttatatcaagagatgtagaagtag---caatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttt 204  Q
    | | || |||| || |||||| || |||| |||   |||||||||||| ||||  ||||| || || ||||| | |||| |||||||||||||||||| |    
T  12900198 atccacatcttttaccaagagctgaagaattaggagcaatagaagatggaaatcatgagattcatattccaactatagaagagtgcttagtttcacttct 12900297  T
Q  205 taggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
    |||||||| |||| | ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12900298 taggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 12900371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 12932807 - 12933077
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    ||||| |||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  12932807 cttactggtagaagacccaccgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttgg 12932906  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    | | || |||| || |||||| || ||||| |||||||||||||| ||||  ||||| || || ||||| | |||| || ||||| ||||||||| ||||    
T  12932907 atccacatcttttaccaagagctgaagaaggagcaatagaagatggaaatcatgagattcatattccaactatagaagattgctttgtttcacttcttag 12933006  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
    ||||| |||| | ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12933007 gattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 12933077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 12949161 - 12949417
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatct--taaacgattttg 106  Q
    ||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||  ||||||||||||  ||||| |  |||| |||||||    
T  12949161 cttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttaaaatttcatttcccaataatttcgtaaa-gattttg 12949259  T
Q  107 gaccgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcac-ttttt 205  Q
    || | || |||| || |||||| ||               |||||| ||||  ||||| ||||| ||||| | |||| ||||||| |||||| | |||||    
T  12949260 gatccacatcttttaccaagagctg---------------aagatggaaatcatgagattcttattccaactatagaagagtgctcagtttccccttttt 12949344  T
Q  206 aggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
    |||||||||||| ||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  12949345 aggattggacttttttgttcattggaatcatcaaatgaaagaatgaatattgtggatgtcactagagagctta 12949417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 17923078 - 17922808
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    |||||||| ||||||||| |  ||||| ||||| |||| ||||||||||| |||||||||||| ||||||||||||||   ||||||| || ||||||||    
T  17923078 cttaccggaagaagacccaccgatgaactttttaaagacggtcaaaatctacataactttgttacaatttcatttccttgcaatcttataaagattttgg 17922979  T
Q  108 accgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttag 207  Q
    | | || |||| || |||||| || ||| | ||||  |||||||| ||||  ||||| ||||  ||||| ||||||||||||||||||||| ||||||||    
T  17922978 atccacatcttttaccaagagctgaagatggagcacgagaagatggaaatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttag 17922879  T
Q  208 gattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 278  Q
    |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922878 gattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta 17922808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 7821 - 7921
Alignment:
Q  9 cttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatctta-aacgattttgg 107  Q
    ||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  7821 cttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttgg 7920  T
Q  108 a 108  Q
    |    
T  7921 a 7921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 31466648 - 31466548
Alignment:
Q  178 tgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctt 277  Q
    ||||||| | || ||| ||||||||||||| |||| ||||  |||| |||||||||||||||||||||| |||| ||| || || |||| ||||||||||    
T  31466648 tgtagagaaatgtttaatttcactttttagtattgcacttggttgttcaatggaatcaccaaaagaaaggatgagtatggttgaagtcattagagagctt 31466549  T
Q  278 a 278  Q
    |    
T  31466548 a 31466548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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