View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_9 (Length: 488)
Name: NF5786_low_9
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 318 - 479
Target Start/End: Original strand, 12649502 - 12649670
Alignment:
| Q |
318 |
attttacacaccctatttgttagacacgtttagcagtatacctatacgattgatcttgattggtgaactcaagttcttattatgatttgaacagcc---- |
413 |
Q |
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| T |
12649502 |
attttacacaccctatttgttagacacgttcagcagtatacttacacgattgatcttaattggtgaactcaagttcttattatgatttgaacagcctctt |
12649601 |
T |
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| Q |
414 |
---tcttgactcttgttgtgacaagttataaccatgcatattgggccttcaactattggtcatattctt |
479 |
Q |
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| T |
12649602 |
gagtcttgactcttgttgtgacaagtcataaccatgcatattgggccttaaactattggtcattttctt |
12649670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 12649216 - 12649326
Alignment:
| Q |
19 |
gtatgttgggtcttgcaagcgttttgtcgaatgaattggtggctcgtgttcaacaatttagtaatagtcatggatacatttaagacaaattcatttattc |
118 |
Q |
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| T |
12649216 |
gtatgttgggtcttgcaagcgttttgtcgaatgaagtggtggctcgtgttcaacaatttagtaatagtcatagatacatttaagacaaattcatttattc |
12649315 |
T |
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| Q |
119 |
caacaaatttt |
129 |
Q |
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| T |
12649316 |
caacaaatttt |
12649326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 12649387 - 12649424
Alignment:
| Q |
124 |
aattttgtcatcaaagaggtaatgtaaaccaaattcta |
161 |
Q |
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| T |
12649387 |
aattttgtcatcaaagagataatgttaaccaaattcta |
12649424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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