View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5787-Insertion-1 (Length: 838)
Name: NF5787-Insertion-1
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 436
Target Start/End: Original strand, 55059814 - 55060243
Alignment:
| Q |
7 |
acaaataggtattaagaattggccagcttcagaatccaaatttctgaattagctgaaataaaatattgtagtcagatgatagtttctctagacatttatg |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55059814 |
acaaataggtattaagaattggccagctccagaatccaaatttctgaattagctgaaataaaatattgtagtcagatgatagtttctctagacatttatg |
55059913 |
T |
|
| Q |
107 |
tgcccagtgtccactattaagttataccttgtataatgtggtgcctatatactacaaaatcacacacagaacaattgtgatcagactccaacaatcttca |
206 |
Q |
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| T |
55059914 |
tgcccagtgtccactattaagttataccttgtataatgtggtgcctatatactacaaaatcacacacagaacaattgtgatcagactccaacaatcttca |
55060013 |
T |
|
| Q |
207 |
tctctttctgatttgggctagcttgaactgattcattcaatccaccatccacaaaatcacaccatcaatcctcttcttagatttaagttcagtaggttca |
306 |
Q |
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| T |
55060014 |
tctctttctgatttgggctagcttgaactgattcattcaatccaccatccacagaatcacaccatcaatcctcttcttagatttaagttcagtaggttca |
55060113 |
T |
|
| Q |
307 |
acaggataattcccagtgaaacaagcataacagaaattagaagaatcatcacccaacaacttcttcaaactatggataggtagaaaagcaagggaatcac |
406 |
Q |
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| T |
55060114 |
acaggataattcccagtgaaacaagcataacagaaattagaagaatcatcacccaacaacttcttcaaactatccataggtagaaaagcaagggaatcac |
55060213 |
T |
|
| Q |
407 |
aaccaataaattccttcatcccagccacac |
436 |
Q |
| |
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|
| T |
55060214 |
aacgaataaattccttaatcccagccacac |
55060243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 431 - 838
Target Start/End: Original strand, 55060283 - 55060694
Alignment:
| Q |
431 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaattttagatg- |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
55060283 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaacaacctcgcaattttagatga |
55060382 |
T |
|
| Q |
530 |
--ttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacagcacaaaccggcgaaagcttcaacttcacaccaaaatctcta |
627 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55060383 |
tgttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacaacacgaaccggcgaaagcttcaacttcacaccaaaatctcta |
55060482 |
T |
|
| Q |
628 |
atcttctgtgatggctcaatgaaagttctaccaacatagtgtgacctaatcaaaccctgttgaaaaggaacaccaacttttgcagcataaccaagtgcag |
727 |
Q |
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| T |
55060483 |
atcttctgtgatggctcaatgaaagttctaccaacatagtgtggcctaatcaaaccctgttgaaaaggaacaccagcttttgcagcataaccaagtgcag |
55060582 |
T |
|
| Q |
728 |
caacaacaccacaatcaggaacaactataacaacatcacaatcaacagaactc-ttagtagccaatatttcaccaaaccatgttcttgattcataaacag |
826 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55060583 |
caacaacaccaaaatcaggaacaactataacaacatcacaatcaacaggactctttagtagccaatatttcaccaaaccatcttcttgattcataaacag |
55060682 |
T |
|
| Q |
827 |
atttcccaaaaa |
838 |
Q |
| |
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|||||||||||| |
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|
| T |
55060683 |
atttcccaaaaa |
55060694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 431 - 788
Target Start/End: Original strand, 27356468 - 27356828
Alignment:
| Q |
431 |
ccacaccataataacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaactacctcacaattttaga--- |
527 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||||| || | | |||||||||| || || |
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| T |
27356468 |
ccacaccatagtaacaagaaccaataattggtggacttgcaattctcatgtgaacttcttttgcacctgcttccttaagcaacctcacaatcttggacga |
27356567 |
T |
|
| Q |
528 |
tgttgttcctctcacaattgaatcatcaacaaccacaacccttttctcttcaagaacagcacaaaccggcgaaagcttcaacttcacaccaaaatctcta |
627 |
Q |
| |
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||||||||| ||||||||||| |||||||| || ||||||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||| |
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| T |
27356568 |
tgttgttcccctcacaattgagtcatcaacgacaacaacccttttaccttcaagcacagcacgaacaggcgaaagcttcaacttcacaccaaaatcccta |
27356667 |
T |
|
| Q |
628 |
atcttctgtgatggctcaatgaaagttctaccaacatagtgtgacctaatcaaaccctgttgaaaaggaacaccaacttttgcagcataaccaagtgcag |
727 |
Q |
| |
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|| ||||| ||||||||||||||||| || || |||||||||||||||||||| || || ||||||||||||||| |||| |||||||||||||| |||| |
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| T |
27356668 |
attttctgagatggctcaatgaaagtccttcctacatagtgtgacctaatcaacccttgctgaaaaggaacaccagctttcgcagcataaccaagagcag |
27356767 |
T |
|
| Q |
728 |
caacaacaccacaatcaggaacaactataacaacatcacaatcaacagaactcttagtagc |
788 |
Q |
| |
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| ||||||||| ||||||||||| |||| ||||||||||||||||||| ||||| |||||| |
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|
| T |
27356768 |
ccacaacaccagaatcaggaacagctatcacaacatcacaatcaacaggactctcagtagc |
27356828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 27356291 - 27356356
Alignment:
| Q |
299 |
taggttcaacaggataattcccagtgaaacaagcataacagaaattagaagaatcatcacccaaca |
364 |
Q |
| |
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|||| |||||||| || ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |
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|
| T |
27356291 |
taggctcaacagggtatttcccagagaaacaagcataacaaaaattaggagaatcattacccaaca |
27356356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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