View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5787-Insertion-3 (Length: 538)
Name: NF5787-Insertion-3
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 538
Target Start/End: Original strand, 53174858 - 53175382
Alignment:
| Q |
7 |
atctcagatattggaattgaaaggatgcggatgattgcggggtagcttaaacatttttatcacttcaattcctcttcgaccaattcaagatagaaggtta |
106 |
Q |
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| T |
53174858 |
atctcagatattggaattgaaaggatgcggatgattgcggggtagcttaaacattgttatcacttcaattcctcttcgaccaattcaagatagaaggtta |
53174957 |
T |
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| Q |
107 |
cacatcaaatgtggccattttatttggactgatgtggaaatgtagcgaaaatataactaaatccgaatatatgacaaatacttgttgtacatagttggcc |
206 |
Q |
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| T |
53174958 |
cacatcaaatgtggccattttatttggactgatgtggaaatgtagcaaaaatatagctaaatccgaatatatgacgaatacttgttgtacatagttggcc |
53175057 |
T |
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| Q |
207 |
tattgctagaatgacaggaaggatacatcatacatactttgctacctatttggtttactagaataccacgattcttgtggaggattgtagatgaaaatac |
306 |
Q |
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| T |
53175058 |
tattgctagaatgacaggaaggatacat-------attttgctacctatttggtttactagaataccacgattcttgtggaggattgtagatgaaaatac |
53175150 |
T |
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| Q |
307 |
tttgatgttcaagtcaacttttaaagaaatggatgagaggatttcataataaattgtgtgtatctttctacttctgttgatattaacctgtttataaata |
406 |
Q |
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| T |
53175151 |
tttgatgttcaagtcaacttttaaagaaatggatgagaggatttcataataaattgtgtgtatctttctacttctgttaatattaccctgtttataaata |
53175250 |
T |
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| Q |
407 |
cagttttaggagaattggtcagaaagttgtggagtttgttgagggaatcctgacatgatttttagatcatatccttatgatgcaacaaaaatgcactgag |
506 |
Q |
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| T |
53175251 |
cagttttaggagaattggtcagaaagttgtagagtttgttgagggaatcctgacatgatttttagatcatatccttatgatgcaacaaaaatgcactgag |
53175350 |
T |
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| Q |
507 |
ttgatttgtttaagtgctttgtaacatatgcc |
538 |
Q |
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| T |
53175351 |
ttgatttgtttaagtgctttgtaacatatgcc |
53175382 |
T |
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