View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5787-Insertion-4 (Length: 449)
Name: NF5787-Insertion-4
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787-Insertion-4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 275 - 449
Target Start/End: Complemental strand, 35606724 - 35606550
Alignment:
| Q |
275 |
tcgttattgtttccctcaaacaaaggaaaaacattgttacttttgtgattgtgtttcagaatccaaaccacatcgagttgcttgcatttgcaagttgcag |
374 |
Q |
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| T |
35606724 |
tcgttattgtttccctcaaacaaaggaaaaacattgttacttttgtgattgtgtttcagaatccaaaccacttcgagttgcttgcatttgcaagttgcag |
35606625 |
T |
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| Q |
375 |
aaagtcagaaacaaacacatgaaaattcaaaaccatagtactcagtcttttgtcacgttttgcttgccacgttgc |
449 |
Q |
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| T |
35606624 |
aaagtcacaaacaaacacatcaaaattcaaaaccatagtactcagtcttttgtcacgttttgcttgccacgttgc |
35606550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 35610827 - 35610555
Alignment:
| Q |
8 |
atctcaacctacttaaaataacgagttaaacgagctgattcgatgtgtcagacccattttaccatgataccatccctaattttaatagacaaactaaatt |
107 |
Q |
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| T |
35610827 |
atcttaacctacttaaaataacgggttaagcgag-----tcgat---tcagacccgatttaccatgataccatccctaattttaatagacaaactaaatt |
35610736 |
T |
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| Q |
108 |
tgactgnnnnnnnaatttaaaaaattcaagttctattttacaatttttaggattaaattgacagacaacccttaaaaattttaaggacttcaatctctga |
207 |
Q |
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| T |
35610735 |
tgattgtttttttaatttaaaaaattcaagttctattttacaattttaaggattaaattgacagacaaccattaaaatttttaaggacttcaatctctga |
35610636 |
T |
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| Q |
208 |
ggtaaactaaccaagaacaaaaatccaaaacaaatatttttcccta----ctttttcaccgtttgttaccatcgttattgtt |
285 |
Q |
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| T |
35610635 |
ggtaaactaaccaagaac-aaaatccaaaacaaatctttttccctatctcctttttcaccgtttgttaccatcgttattgtt |
35610555 |
T |
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