View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5787-Insertion-5 (Length: 420)

Name: NF5787-Insertion-5
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5787-Insertion-5
NF5787-Insertion-5
[»] chr5 (1 HSPs)
chr5 (8-420)||(33601057-33601464)
[»] chr2 (20 HSPs)
chr2 (128-420)||(10471440-10471731)
chr2 (8-90)||(10471338-10471420)
chr2 (8-88)||(10505491-10505571)
chr2 (8-86)||(10543536-10543614)
chr2 (11-90)||(10516636-10516715)
chr2 (255-420)||(10544050-10544214)
chr2 (221-420)||(10505767-10505964)
chr2 (7-86)||(7483204-7483283)
chr2 (338-417)||(10517104-10517183)
chr2 (9-88)||(27966403-27966482)
chr2 (9-88)||(28106194-28106273)
chr2 (12-86)||(10491376-10491450)
chr2 (11-88)||(10462247-10462324)
chr2 (8-88)||(9081321-9081401)
chr2 (9-74)||(10859055-10859120)
chr2 (221-283)||(10462490-10462552)
chr2 (221-283)||(10516981-10517043)
chr2 (15-74)||(10847510-10847569)
chr2 (338-420)||(7482805-7482887)
chr2 (234-283)||(10491662-10491711)
[»] chr7 (1 HSPs)
chr7 (8-70)||(15044831-15044893)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 33601057 - 33601464
Alignment:
Q  8 cataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaacaacnnnnnnnnnnnntataa 107  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            |||||    
T  33601057 cataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccctggaccagaaacaacaaaaaataaaaatataa 33601156  T
Q  108 gcttgtatagttgtattgtattgtatgtattattcatgcaaaaatcaacgatatcaatttgtgacggatggtagcacgatggtgttttatggtggaaaaa 207  Q
    |||||||||||||||||||||     |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33601157 gcttgtatagttgtattgtat-----gtattattcatgcaaaaatcaatgatatcaatttgtgaaggatggtagcacgatggtgttttatggtggaaaaa 33601251  T
Q  208 gcggcnnnnnnnntggagcattttatgccttcttttatggttcaccgtctgtaatcgttaactccatccaaaatagagttagcggttataaagaagtgac 307  Q
    |||||        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601252 gcggctaaaaaa-tggaggattttatgccttcttttatggttcaccgtctgtaatcgttaactccatccaaaatagagttagcggttataaagaagtgac 33601350  T
Q  308 ccttagtaaagtcacaaagctcctttgatt-tttgtcaacaaactaatgacacaattatggccttcactctccccccgtcctaactacccatagctaggc 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33601351 ccttagtaaagtcacaaagctcctttgattctttgtcaacaaactaatgacacaattatggccttcactctcccccagtcctaactacccatagctaggc 33601450  T
Q  407 gtaactaactggcc 420  Q
    ||||||||||||||    
T  33601451 gtaactaactggcc 33601464  T

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Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 128 - 420
Target Start/End: Original strand, 10471440 - 10471731
Alignment:
Q  128 ttgtatgtattattcatgcaaaaatcaacgatatcaatttgtgacggatggtagcacgatggtgttttatggtggaaaaagcggcnnnnnnnntggagca 227  Q
    ||||||||||| || |||| |||||||| | |||||| | |||| ||||||||||||||||| ||||||||||||||| ||||||        ||||| |    
T  10471440 ttgtatgtattgtttatgccaaaatcaatgctatcaaat-gtgaaggatggtagcacgatggcgttttatggtggaaatagcggctaaaaaa-tggagga 10471537  T
Q  228 ttttatgccttcttttatggttcaccgtctgtaatcgttaactccatccaaaatagagttagcggttataaagaagtgacccttagtaaagtcacaaagc 327  Q
    ||||| |||||||||||||||||||| || |||||| ||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||  | |||||    
T  10471538 ttttaagccttcttttatggttcaccatccgtaatcattaactccatccaaaatagcgttagcgcttacaaagaagggacccttagtaaagctagaaagc 10471637  T
Q  328 tcctttgatt-tttgtcaacaaactaatgacacaattatggccttcactctccccccgtcctaactacccatagctaggcgtaactaactggcc 420  Q
    |||||||||| |||||||||||||||||||||||| |||| || |||||||| |||  ||||||||||||||||| |||| |||||||||||||    
T  10471638 tcctttgattctttgtcaacaaactaatgacacaactatgtccctcactctctcccactcctaactacccatagcgaggcataactaactggcc 10471731  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 10471338 - 10471420
Alignment:
Q  8 cataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaacaac 90  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||| ||||||||||    
T  10471338 cataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccctggatcagaaacaac 10471420  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 10505491 - 10505571
Alignment:
Q  8 cataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaaca 88  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||| || ||||||||||    
T  10505491 cataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttgcaacccctgtaccagaaaca 10505571  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 10543536 - 10543614
Alignment:
Q  8 cataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaa 86  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||| || ||||||||    
T  10543536 cataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccctgtaccagaaa 10543614  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 10516636 - 10516715
Alignment:
Q  11 aattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaacaac 90  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||  ||||||||| || ||||||||||||    
T  10516636 aattactagcttcagttggacacggcaaataattaagtagaccatccaaaagtaattgtagcccctgtaccagaaacaac 10516715  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 420
Target Start/End: Original strand, 10544050 - 10544214
Alignment:
Q  255 tctgtaatcgttaactccatccaaaatagagttagcggttataaagaagtgacccttagtaaagtcacaaagctcctttgatt-tttgtcaacaaactaa 353  Q
    ||||||||| ||  ||||| |||||||||  | |||| ||| ||||||  || ||| ||||||| | |||||||||||||||| ||||||||||||||||    
T  10544050 tctgtaatcattgtctccagccaaaatagcataagcgcttacaaagaaaagatcctcagtaaagccgcaaagctcctttgattctttgtcaacaaactaa 10544149  T
Q  354 tgacacaattatggccttcactctccccccgtcctaactacccatagctaggcgtaactaactggcc 420  Q
    | ||||||||||| || ||||||||||||  |||| ||| |||||||||||  |||| |||||||||    
T  10544150 t-acacaattatgtccctcactctcccccactcctgact-cccatagctagttgtaaataactggcc 10544214  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 420
Target Start/End: Original strand, 10505767 - 10505964
Alignment:
Q  221 tggagcattttatgccttcttttatggttcaccgtctgtaatcgttaactccatccaaaatagagttagcggttataaagaagtgacccttagtaaagtc 320  Q
    ||||| |||||| |||||||| ||||||||||| |||||||||||||| |||||||||| |||    |||  ||| |||||   || ||| |||| |  |    
T  10505767 tggaggattttaggccttcttctatggttcaccatctgtaatcgttaattccatccaaa-tagcagaagcacttacaaagacaggaacctcagtaga--c 10505863  T
Q  321 acaaagctcctttgattttt-gtcaacaaactaatgacacaattatggccttcactctccccccgtcctaactacccatagctaggcgtaactaactggc 419  Q
    ||||||||||||| | | || |||| |||| |||||||||||||| |||  ||||||||||||  |||||||||| | |||||||| |||||||||||||    
T  10505864 acaaagctcctttcagtcttcgtcagcaaattaatgacacaattacggcactcactctcccccactcctaactacgcctagctaggtgtaactaactggc 10505963  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 7483283 - 7483204
Alignment:
Q  7 acataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaa 86  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| | |||||| |||| ||||| || ||||||||    
T  7483283 acataattactagcttcagttggacacggcaaatagttaagcacaccagcaaaaagtagttgcagcccctgtaccagaaa 7483204  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 10517104 - 10517183
Alignment:
Q  338 tttgtcaacaaactaatgacacaattatggccttcactctccccccgtcctaactacccatagctaggcgtaactaactg 417  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||||  |||||  ||||||||||||||| ||||||||||    
T  10517104 tttgtcaacaaactaatgacacaactatggccctcattctcccccactcctacgtacccatagctaggcttaactaactg 10517183  T

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Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 27966403 - 27966482
Alignment:
Q  9 ataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaaca 88  Q
    |||||||||||||||| ||||||||||||||| |||||  ||||||||||||||| |||||||||| || ||||| ||||    
T  27966403 ataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccctgcaccagcaaca 27966482  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 28106273 - 28106194
Alignment:
Q  9 ataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaaca 88  Q
    |||||||||||||||| ||||||||||||||| |||||  ||||||||||||||| |||||||||| || ||||| ||||    
T  28106273 ataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccctgcaccagcaaca 28106194  T

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Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 10491376 - 10491450
Alignment:
Q  12 attactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaa 86  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||| ||||| || ||||||||    
T  10491376 attaatagcttcagttggacacggcaaatagttaagcacaccatccaaaagtagttgcagcccctgtaccagaaa 10491450  T

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Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 10462247 - 10462324
Alignment:
Q  11 aattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaaca 88  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||||||||| | |||||| ||| || ||||||||||    
T  10462247 aattaatagcttcagttggacacggcaaataattaagtacaccatccaaaattagttgtaacccctgcaccagaaaca 10462324  T

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Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 9081401 - 9081321
Alignment:
Q  8 cataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccttggaccagaaaca 88  Q
    |||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||  | |||| ||| || ||||||||||    
T  9081401 cataattacttgcttcaattggacacggcaaataattaagtacaccatccaaaagaagctgtaacccctgtaccagaaaca 9081321  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 10859055 - 10859120
Alignment:
Q  9 ataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagccc 74  Q
    |||||||||| ||||||||||||| ||||||| ||||   ||||||||||||||| ||||||||||    
T  10859055 ataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagccc 10859120  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 10462490 - 10462552
Alignment:
Q  221 tggagcattttatgccttcttttatggttcaccgtctgtaatcgttaactccatccaaaatag 283  Q
    ||||| ||||||  ||||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  10462490 tggaggattttagaccttcttatatggtccaccgtctgtaatcgttaactccattcgaaatag 10462552  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 10516981 - 10517043
Alignment:
Q  221 tggagcattttatgccttcttttatggttcaccgtctgtaatcgttaactccatccaaaatag 283  Q
    ||||| |||||  |||||||| |||||||||||   |||||||||||||||||||||||||||    
T  10516981 tggaggatttttggccttcttctatggttcaccaaatgtaatcgttaactccatccaaaatag 10517043  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 10847510 - 10847569
Alignment:
Q  15 actagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagccc 74  Q
    |||||||||| ||||||| ||||||| ||||   ||||||||||||||| ||||||||||    
T  10847510 actagcttcaattggacagggcaaataattagttacaccatccaaaagtagttgtagccc 10847569  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 420
Target Start/End: Complemental strand, 7482887 - 7482805
Alignment:
Q  338 tttgtcaacaaactaatgacacaattatggccttcactctccccccgtcctaactacccatagctaggcgtaactaactggcc 420  Q
    ||||||||||||||||||   | | ||||||| |||||| ||||   ||| |||||||||||||| |||| ||||||||||||    
T  7482887 tttgtcaacaaactaatggttcgactatggccctcactccccccaactcccaactacccatagctgggcgaaactaactggcc 7482805  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 10491662 - 10491711
Alignment:
Q  234 gccttcttttatggttcaccgtctgtaatcgttaactccatccaaaatag 283  Q
    |||||||| || |||||||| |||| |||||||||||||||| |||||||    
T  10491662 gccttcttctagggttcaccatctgcaatcgttaactccatctaaaatag 10491711  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 15044831 - 15044893
Alignment:
Q  8 cataattactagcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgta 70  Q
    |||||||| || ||||| ||||||| ||||||| | |||| |||||||||| |||||||||||    
T  15044831 cataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgta 15044893  T

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