View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5787-Insertion-6 (Length: 388)
Name: NF5787-Insertion-6
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 11730024 - 11730303
Alignment:
| Q |
7 |
aatttgtactatgaattgtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtacttggcattgcattaattaa |
106 |
Q |
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| T |
11730024 |
aatttgtactatgaatagtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtacttggcattgcattaattaa |
11730123 |
T |
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| Q |
107 |
gactgcgttcccacaagcacaaatatgccgtcctaacnnnnnnntgaaatggtcatcttatgaaatggtgactgtaagaattaataagttaatgtgatgt |
206 |
Q |
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| T |
11730124 |
ggctgcgttcccacaagcacaaatatgccgtcctaacaaaaaaatgaaatggtcatcttatgaaatggtgactgtaagaattaatatgttaatgtgatgt |
11730223 |
T |
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| Q |
207 |
actgtcattcggctagtcactaaataatcttaattgattaatttagcttatcaacattacacacttccatttgtcaagaa |
286 |
Q |
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| T |
11730224 |
actgtcattcggctagtcactaaataatcttaattgattaatttagcttatcaacattacacacttctatttgtcaagaa |
11730303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 11687307 - 11687134
Alignment:
| Q |
122 |
agcacaaatatgccgtcctaacnnnnnnntgaaatggtcatcttatgaaatggtgactgtaagaatta-----ataagttaatgtgatgtactgtcattc |
216 |
Q |
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| T |
11687307 |
agcacaaatatgccgtcctaacaaaaaaatgaaatggtcatcttatgaaatggtgactgtaagaattacagtaataagttaatgtgatgtactgtcattc |
11687208 |
T |
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| Q |
217 |
ggctagtcactaaataatcttaattgattaatttagcttatcaacattacacacttccatttgtcaagaacatt |
290 |
Q |
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| T |
11687207 |
ggctagtcactaaataatcttaattgattaatttagcttatcaacattacacacttccatttgtcaagaacatt |
11687134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 11687105 - 11687040
Alignment:
| Q |
313 |
tgaacaataaaatgagtagtttggattcatattgtcagtaattttctattttgtatttgagctaac |
378 |
Q |
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| T |
11687105 |
tgaacaataaaatgaatagtttggattcatattgtcagtgactttctattttatatttgagctaac |
11687040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 11720864 - 11720939
Alignment:
| Q |
7 |
aatttgtactatgaattgtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtac |
87 |
Q |
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| T |
11720864 |
aatttgtactatgaattgtggtatttg-tggatgaatattggcatcgtattaaggcctat----ttatattgaatttgtac |
11720939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 11730331 - 11730396
Alignment:
| Q |
313 |
tgaacaataaaatgagtagtttggattcatattgtcagtaattttctattttgtatttgagctaac |
378 |
Q |
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| T |
11730331 |
tgaacaataaaatgactagtttggattcatattgtcaatgactttctattttatatttgagctaac |
11730396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 11712234 - 11712180
Alignment:
| Q |
7 |
aatttgtactatgaattgtggtatttgttggatgaatattggcgtcgtattaaagc |
62 |
Q |
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| T |
11712234 |
aatttgtattatgaattgcggtatttgt-ggatgaatattggcttcgtattaaagc |
11712180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 11690004 - 11689903
Alignment:
| Q |
152 |
gaaatggtcatcttatgaaatggtgactgtaagaattaataagttaatgtgatgtactgtcattcggctagtc----actaaataatcttaattgattaa |
247 |
Q |
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| T |
11690004 |
gaaatggtcatcttgtgaaatggtaa---taagaatcaataagctaaagttatgtgctgccatccggctagtccttcactaaataatcttaattgtttaa |
11689908 |
T |
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| Q |
248 |
tttag |
252 |
Q |
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||||| |
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| T |
11689907 |
tttag |
11689903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 11721126 - 11721155
Alignment:
| Q |
223 |
tcactaaataatcttaattgattaatttag |
252 |
Q |
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| T |
11721126 |
tcactaaataatcttaattgattaatttag |
11721155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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