View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5787_high_2 (Length: 380)

Name: NF5787_high_2
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5787_high_2
NF5787_high_2
[»] chr4 (13 HSPs)
chr4 (55-369)||(31150979-31151292)
chr4 (75-310)||(31488783-31489018)
chr4 (81-369)||(31529136-31529424)
chr4 (75-309)||(31030416-31030650)
chr4 (75-309)||(31020535-31020769)
chr4 (81-369)||(31159877-31160165)
chr4 (80-310)||(31476203-31476433)
chr4 (69-287)||(31496132-31496350)
chr4 (75-307)||(31501308-31501540)
chr4 (153-287)||(31162338-31162471)
chr4 (81-262)||(31023490-31023670)
chr4 (126-309)||(31482085-31482268)
chr4 (81-202)||(31244241-31244362)
[»] chr6 (11 HSPs)
chr6 (79-310)||(12785602-12785833)
chr6 (79-310)||(12781412-12781643)
chr6 (86-307)||(12782166-12782387)
chr6 (78-287)||(33307172-33307381)
chr6 (67-287)||(33412604-33412824)
chr6 (67-287)||(33265568-33265788)
chr6 (67-287)||(33274712-33274932)
chr6 (76-305)||(33390741-33390970)
chr6 (198-287)||(33288261-33288350)
chr6 (67-287)||(33403297-33403517)
chr6 (61-107)||(9169557-9169603)
[»] chr2 (1 HSPs)
chr2 (74-287)||(17437870-17438083)
[»] scaffold1749 (1 HSPs)
scaffold1749 (66-258)||(861-1053)
[»] scaffold0428 (1 HSPs)
scaffold0428 (66-258)||(9622-9814)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 55 - 369
Target Start/End: Complemental strand, 31151292 - 31150979
Alignment:
Q  55 tctcgtcatctccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgca 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151292 tctcgtcatctccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgca 31151193  T
Q  155 aagaaaatgcattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagattttt 254  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151192 aagaaaat-cattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagattttt 31151094  T
Q  255 gttgtggttttctctaagaactatgcttcctcagtttggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgc 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151093 gttgtggttttctctaagaactatgcttcctcagtttggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgc 31150994  T
Q  355 ctgtgttctatgatg 369  Q
    |||||||||||||||    
T  31150993 ctgtgttctatgatg 31150979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 310
Target Start/End: Original strand, 31488783 - 31489018
Alignment:
Q  75 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 174  Q
    |||||||||||||||||||||| ||| |||||| ||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||| | |    
T  31488783 aattattatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgt 31488882  T
Q  175 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaa 274  Q
    | || ||||| ||||||||  | ||||||||||| |||||||| || ||| |||| ||||||||||  |||||| ||||  ||| |||  |||| || ||    
T  31488883 ttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa 31488982  T
Q  275 ctatgcttcctcagtttggtgtttgcgagaattgga 310  Q
    |||||||||||||  |||||| ||||||||||||||    
T  31488983 ctatgcttcctcaacttggtgcttgcgagaattgga 31489018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 81 - 369
Target Start/End: Complemental strand, 31529424 - 31529136
Alignment:
Q  81 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 180  Q
    |||||||||||| ||||||| |||||   ||| |||||  ||||||||||||||||||||||| | ||||| |||| || | ||||| || |||| || |    
T  31529424 tatgacgtgtttatcagcttcagaggagcagacacacgattcaacttcactgatcatcttttttccgccctccaaataagaggcattgttgcatttagag 31529325  T
Q  181 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgc 280  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||| || || |||| ||||| || |||  |||| || ||||| || ||||||||    
T  31529324 atgacactaagcttaagaaaggtgaatctatagcacctgaactccttcgtgctatcgaagcctctcggactttcattgttgtcttctcaaacaactatgc 31529225  T
Q  281 ttcctcagtttggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatg 369  Q
    |||||||  |||||| ||||| |||||| | | ||| |||||  || | ||||| ||||||||||||||||| ||||| ||||||||||    
T  31529224 ttcctcaacttggtgcttgcgggaattgcaatacatccttcattgcgtacaactttctggaaaacgtgttctccctgttttctatgatg 31529136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 75 - 309
Target Start/End: Complemental strand, 31030650 - 31030416
Alignment:
Q  75 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 174  Q
    ||||||||||| |||||||||| |||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||    
T  31030650 aattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 31030551  T
Q  175 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaa 274  Q
    | || || || ||||| ||  | ||||||||||||||| |||| || ||| |||| ||||||||||  |||||| ||||  ||| |||  |||| || ||    
T  31030550 ttagagacgacactaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa 31030451  T
Q  275 ctatgcttcctcagtttggtgtttgcgagaattgg 309  Q
    |||||||||||||  |||||| |||||||||||||    
T  31030450 ctatgcttcctcaacttggtgcttgcgagaattgg 31030416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 309
Target Start/End: Complemental strand, 31020769 - 31020535
Alignment:
Q  75 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 174  Q
    ||||||||||| |||||||||| |||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||    
T  31020769 aattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 31020670  T
Q  175 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaa 274  Q
    | || || ||  |||| ||  | ||||||||||||||| |||| || ||| |||| ||||||||||  |||||| ||||  ||| |||  |||| || ||    
T  31020669 ttagagacgacgctaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaa 31020570  T
Q  275 ctatgcttcctcagtttggtgtttgcgagaattgg 309  Q
    |||| ||||||||  |||||| |||||||||||||    
T  31020569 ctattcttcctcaacttggtgcttgcgagaattgg 31020535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 81 - 369
Target Start/End: Complemental strand, 31160165 - 31159877
Alignment:
Q  81 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 180  Q
    |||||||| ||||| |||||||||||  |||| |||| |  ||| ||  | |||||||||||||||||||| ||||||||| ||||  || |||||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  181 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgc 280  Q
    ||||| |||| |||||||||||||||||||||||||| || |||||||  |||||||||| |||  || ||||| ||||  | ||||| || ||||||||    
T  31160065 atgattctaacctgaagaaaggtgaatccatagcacccgagctccttcatgcaattgaagcctcaaaggtttttattgtactcttctcaaaaaactatgc 31159966  T
Q  281 ttcctcagtttggtgtttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatg 369  Q
    |||||||   ||||| |||||||| ||||| | ||| |||||  ||  |||| | |||||||  |||||||| ||| | ||||||||||    
T  31159965 ttcctcaacatggtgcttgcgagagttggaatacatccttcactgcagtcaagtttctggaactcgtgttctccctattttctatgatg 31159877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 310
Target Start/End: Original strand, 31476203 - 31476433
Alignment:
Q  80 ttatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcagg 179  Q
    ||||||||||||||| ||||| |||||| ||||||| |||  ||| |||||||||   ||||||| ||||||  ||  |||| |  ||||| |||| |||    
T  31476203 ttatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagg 31476302  T
Q  180 gatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatg 279  Q
    ||||| ||||| ||  | ||||||||||||||||||||||||||| |||  ||||||||||  |||||| |||| |||||||| || || |||||||| |    
T  31476303 gatgacactaatcttcaaaaaggtgaatccatagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggtcttgtcaaagaactacg 31476402  T
Q  280 cttcctcagtttggtgtttgcgagaattgga 310  Q
    ||| ||||  |||||| |||  |||||||||    
T  31476403 ctttctcaacttggtgcttgaaagaattgga 31476433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 287
Target Start/End: Original strand, 31496132 - 31496350
Alignment:
Q  69 aggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattt 168  Q
    ||||| ||| |||||||||||||||||| |||||||||| | || || |||  ||| ||||||||||||||||||| | || | || ||| || ||||||    
T  31496132 aggagcaatcattatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcattt 31496231  T
Q  169 tttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctc 268  Q
     | |||| || ||||| ||||| ||    |||||||||||||||| |||| | |||||| | ||||||||| |||||||| ||||||||||||| || ||    
T  31496232 ctgcatttagagatgacactaatcttccaaaaggtgaatccataggacctaagctcctttgtgcaattgaaaactctcaggtttttgttgtggtcttatc 31496331  T
Q  269 taagaactatgcttcctca 287  Q
     | ||||||||||| ||||    
T  31496332 aaggaactatgctttctca 31496350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 307
Target Start/End: Original strand, 31501308 - 31501540
Alignment:
Q  75 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 174  Q
    ||||||||||| | ||||||||  ||||||||| |||| || |||  ||| |||||| |||||||||||| |||| |  | ||| || ||||| || |||    
T  31501308 aattattatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttgatgccttcaacagagaaggcattcttgcat 31501407  T
Q  175 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaa 274  Q
    | |||||||| ||||| ||    |||||||||||||||||| | || || ||||| ||||||||||| ||| | |||||||||| |||  |||| | |||    
T  31501408 ttagggatgacactaatcttccaaaaggtgaatccatagcatccgagcttcttcgtgcaattgaagattcttatatttttgttgcggtcctctcaaggaa 31501507  T
Q  275 ctatgcttcctcagtttggtgtttgcgagaatt 307  Q
    ||||||||||||| ||||||| |||| ||||||    
T  31501508 ctatgcttcctcaatttggtgcttgcaagaatt 31501540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 31162471 - 31162338
Alignment:
Q  153 caaagaaaatgcattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagattt 252  Q
    ||||||||| | |||||| |||| ||||||||| ||||||| || |||||||||||||| | | | || |||||| ||||||| | |||||||| |||||    
T  31162471 caaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcg-agactctctgattt 31162373  T
Q  253 ttgttgtggttttctctaagaactatgcttcctca 287  Q
    |  ||||||| || |||||||||||||||||||||    
T  31162372 tcattgtggtattttctaagaactatgcttcctca 31162338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 262
Target Start/End: Complemental strand, 31023670 - 31023490
Alignment:
Q  81 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 180  Q
    |||||||||||||| ||||| | ||||||||| || |||  |||||||| |||||||||||||||| || | | ||||||| | ||  || |||||| ||    
T  31023670 tatgacgtgtttgtgagcttcaaaggtaaagacactcgctacaacttcattgatcatctttttgcttccttccgaagaaaaggtatcattgcattcaagg 31023571  T
Q  181 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggt 262  Q
    | ||| | | ||| ||||||||||||||||| |||||  | |||| ||  |||||||||| |||||| |||||| |||||||    
T  31023570 acgatgcaatgctcaagaaaggtgaatccattgcaccatagctccctcatgcaattgaagcctctca-atttttattgtggt 31023490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 31482085 - 31482268
Alignment:
Q  126 ttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactcc 225  Q
    ||||||||||||||||||| |||||| | |||||||  ||||  | ||||||||||| |||   | || || |  |||| |||||||| ||| | ||||     
T  31482085 ttcactgatcatctttttggtgccctccgaagaaaaaacattgctgcattcagggataatagacatctcaacagtggtgcatccatagaacccgcactct 31482184  T
Q  226 ttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgcttcctcagtttggtgtttgcgagaattgg 309  Q
    |||| |||||||||| ||||||||||||  | ||||| || |||||||  ||||||||||||  |||||| ||||| |||||||    
T  31482185 ttcgtgcaattgaagtctctcagattttcatcgtggtcttgtctaagagttatgcttcctcaacttggtgcttgcgtgaattgg 31482268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 31244241 - 31244362
Alignment:
Q  81 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 180  Q
    ||||| |||||||| ||||||||||||   || ||||||  ||| ||||||||||| |||||||   | || || | |||| ||||| || | |||||||    
T  31244241 tatgatgtgtttgtgagctttagaggtggcgacacacgcaacaatttcactgatcacctttttggcactctccataaaaaaggcattgttaccttcaggg 31244340  T
Q  181 atgatactaagctgaagaaagg 202  Q
    ||||||| ||||| ||||||||    
T  31244341 atgatacaaagctcaagaaagg 31244362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 12785833 - 12785602
Alignment:
Q  79 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcag 178  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| ||||| |||||||||||||||||||| ||||||  | |||||  | |||||||    
T  12785833 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcag 12785734  T
Q  179 ggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactat 278  Q
     ||||| ||||| || || |||||||||| ||||||||| | |||| || |||||||||||| ||||||| |||   |||| || |||||||||||||||    
T  12785733 agatgacactaaacttaaaaaaggtgaattcatagcacccggactctttagagcaattgaagcctctcagctttacattgttgtattctctaagaactat 12785634  T
Q  279 gcttcctcagtttggtgtttgcgagaattgga 310  Q
    ||||| |||  |||||||||||||||||||||    
T  12785633 gcttcttcaacttggtgtttgcgagaattgga 12785602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 12781643 - 12781412
Alignment:
Q  79 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcag 178  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| ||||| |||||| ||| ||||||||| ||||||  | |||||  | |||||||    
T  12781643 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatttttgtgctgccctacaaagacgaggcattaatgcattcag 12781544  T
Q  179 ggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactat 278  Q
     ||||| ||||| || || ||||| |||| ||||||||| | |||| || |||||||||||| ||||||| |||   |||| || |||||||||||||||    
T  12781543 agatgacactaaacttaaaaaaggcgaattcatagcacccggactctttagagcaattgaagcctctcaggtttacattgttgtattctctaagaactat 12781444  T
Q  279 gcttcctcagtttggtgtttgcgagaattgga 310  Q
    |||||||||  |||||||||||||||||||||    
T  12781443 gcttcctcaacttggtgtttgcgagaattgga 12781412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 307
Target Start/End: Complemental strand, 12782387 - 12782166
Alignment:
Q  86 cgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcagggatgat 185  Q
    ||||||||| ||||| ||||| | ||| |||||  |||| ||||||||||||||||||| |||||| ||||||||| | |||||| ||||||| |||||     
T  12782387 cgtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgac 12782288  T
Q  186 actaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgcttcct 285  Q
    ||||| ||  | |||||| | ||||||||| | || ||| ||| ||||||||||| ||||||| ||||  |||| || |||||||| ||||||||||| |    
T  12782287 actaatcttcaaaaaggtaattccatagcatccgacctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaaaaactatgcttctt 12782188  T
Q  286 cagtttggtgtttgcgagaatt 307  Q
    ||  ||||||||||||||||||    
T  12782187 caacttggtgtttgcgagaatt 12782166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 287
Target Start/End: Complemental strand, 33307381 - 33307172
Alignment:
Q  78 tattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattca 177  Q
    |||||||| |||||||||| ||| |||||| |||| || |||  |||||| ||||||  |||||||| ||||||  ||| |||| |||||||| ||||      
T  33307381 tattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaactttactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttc 33307282  T
Q  178 gggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaacta 277  Q
    ||||||| ||||| ||  | || |||||||| |||| |||||| |||||||||||||| ||||  |||| | |||||||||  || ||||| | ||||||    
T  33307281 gggatgacactaatcttcaaaagggtgaatctatagaacctgagctccttcgagcaatcgaaggatctcgggtttttgttgcagtcttctcaaggaacta 33307182  T
Q  278 tgcttcctca 287  Q
    ||||||||||    
T  33307181 tgcttcctca 33307172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 287
Target Start/End: Complemental strand, 33412824 - 33412604
Alignment:
Q  67 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 166  Q
    |||| |||||||||||||| |||||||||| ||| |||||| |||| || |||  ||| ||||||||| ||||||||| ||| ||  |||  ||| | ||    
T  33412824 caagaagaaattattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttgatgcacttgaaaccaaaggtat 33412725  T
Q  167 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttc 266  Q
    || | |||| |||||||| || || || || |||||||||  ||||| |||||| |||||||| ||||| ||||  |||||| |||| || |  || ||     
T  33412724 ttatgcatttagggatgacacaaatcttaaaaaaggtgaagtcataggacctgagctccttcgtgcaatcgaaggatctcaggttttcgtcgcagtcttt 33412625  T
Q  267 tctaagaactatgcttcctca 287  Q
    || | ||||||||||||||||    
T  33412624 tcaaggaactatgcttcctca 33412604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 287
Target Start/End: Complemental strand, 33265788 - 33265568
Alignment:
Q  67 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 166  Q
    |||| |||||||||||||| || ||||||| ||| |||||| ||||||| ||   ||| ||||| |||  |||||||| |||||| |||| |||| ||||    
T  33265788 caagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcat 33265689  T
Q  167 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttc 266  Q
    | ||  |||   |||||| ||||| ||    |||||||||||||| | ||| || |||||||||||||| ||||  |||||  ||||||||| ||| ||     
T  33265688 tattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttt 33265589  T
Q  267 tctaagaactatgcttcctca 287  Q
    || |  |||||||||||||||    
T  33265588 tcaataaactatgcttcctca 33265568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 287
Target Start/End: Complemental strand, 33274932 - 33274712
Alignment:
Q  67 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 166  Q
    |||| |||||||||||||| || ||||||| ||| |||||| ||||||| ||   ||| ||||| |||  |||||||| |||||| |||| |||| ||||    
T  33274932 caagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcat 33274833  T
Q  167 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttc 266  Q
    | ||  |||   |||||| ||||| ||    |||||||||||||| | ||| || |||||||||||||| ||||  |||||  ||||||||| ||| ||     
T  33274832 tattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttt 33274733  T
Q  267 tctaagaactatgcttcctca 287  Q
    || |  |||||||||||||||    
T  33274732 tcaataaactatgcttcctca 33274712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 305
Target Start/End: Complemental strand, 33390970 - 33390741
Alignment:
Q  76 attattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcatt 175  Q
    |||||||||| |||||||||| |||  ||||| |||| || |||  ||| |||| ||||  |||||||| ||||||| ||| |||| ||||| ||  |||    
T  33390970 attattatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttgatgccctggaaacaaaaggcattcttgtatt 33390871  T
Q  176 cagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaac 275  Q
      ||||| | |  || ||  | |||||||||||||||| ||||||||| |||| | |||| ||||  |||||| ||| ||||| ||||||||| |  |||    
T  33390870 tcgggataacagaaatcttcaaaaaggtgaatccataggacctgaacttcttcaatcaatcgaaggatctcaggtttatgttgcggttttctcaagaaac 33390771  T
Q  276 tatgcttcctcagtttggtgtttgcgagaa 305  Q
    ||||||| ||||   |||||||||| ||||    
T  33390770 tatgctttctcaacatggtgtttgcaagaa 33390741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 33288350 - 33288261
Alignment:
Q  198 aaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgcttcctca 287  Q
    |||||||||||||||| |||||| |||||||||||||| ||||  || ||| |||| ||||  || ||||| |  |||||||||||||||    
T  33288350 aaaggtgaatccataggacctgagctccttcgagcaatcgaaggatcccaggttttcgttgcagtattctcaagaaactatgcttcctca 33288261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 287
Target Start/End: Complemental strand, 33403517 - 33403297
Alignment:
Q  67 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 166  Q
    |||| ||||||||||| || |||||| ||| |||||||||| |||| || ||   ||| |||||||||  |||||||| ||||||  ||| |||| ||||    
T  33403517 caagaagaaattattacgatgtgtttatcacctttagaggtgaagacactcggaacaatttcactgattttctttttgatgcccttgaaacaaaaggcat 33403418  T
Q  167 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttc 266  Q
    |||| ||||  | ||||| ||||| ||  |  | ||||||||| ||| ||| || || |||||||||||  |||  | |||| |||| ||||| || ||     
T  33403417 ttttgcatttcgagatgacactaatcttcaacagggtgaatccttagaacccgagcttcttcgagcaatcaaaggatttcaggttttcgttgtcgtcttt 33403318  T
Q  267 tctaagaactatgcttcctca 287  Q
    || | ||||||||||||||||    
T  33403317 tcaaggaactatgcttcctca 33403297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 9169603 - 9169557
Alignment:
Q  61 catctccaaggagaaattattatgacgtgtttgtcagctttagaggt 107  Q
    ||||||||||||||||| ||||||| |||||| ||| ||||||||||    
T  9169603 catctccaaggagaaatcattatgatgtgtttttcacctttagaggt 9169557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 287
Target Start/End: Original strand, 17437870 - 17438083
Alignment:
Q  74 aaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttca 173  Q
    |||| ||||||| |||||||||| |||||||||| ||||||| |||  ||| |||||||||  ||||||||  |||||  ||||||||  ||||||| ||    
T  17437870 aaatcattatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgca 17437969  T
Q  174 ttcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaaga 273  Q
    ||  | ||||| ||||| ||  | |||||||||||||||| | |||| || ||||||||||| ||||  |||||| ||||||||| ||||||||| ||||    
T  17437970 tttcgagatgacactaatcttcaaaaaggtgaatccataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctc-aaga 17438068  T
Q  274 -actatgcttcctca 287  Q
     ||||||||||||||    
T  17438069 tactatgcttcctca 17438083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 1053 - 861
Alignment:
Q  66 ccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgca 165  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||  ||| |||||| ||  |||||||||||||||  |||||||| | |    
T  1053 ccaaggagaaattgttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggta 954  T
Q  166 ttttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 258  Q
    ||| | | ||||||||||| || || ||    || ||||||||||||| |||||| ||||||||| |||| ||||  |||||| |||| ||||    
T  953 tttatgctttcagggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttg 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 9814 - 9622
Alignment:
Q  66 ccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgca 165  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||  ||| |||||| ||  |||||||||||||||  |||||||| | |    
T  9814 ccaaggagaaattgttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggta 9715  T
Q  166 ttttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttg 258  Q
    ||| | | ||||||||||| || || ||    || ||||||||||||| |||||| ||||||||| |||| ||||  |||||| |||| ||||    
T  9714 tttatgctttcagggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttg 9622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University