View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5787_high_3 (Length: 278)
Name: NF5787_high_3
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 31603436 - 31603704
Alignment:
| Q |
2 |
acaaaatccgacatcaacattgtgtgttcgtaaagttttcggactgttatattacttttctatctcttcaagtttttgtctcaccgttggtccgacgtcg |
101 |
Q |
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| T |
31603436 |
acaaaatccgacatcaacattgtgtgttcgtaaagttttccgactgttatattacttttctatctcttcaagtttttgtctcaccgctggtccgacgtcg |
31603535 |
T |
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| Q |
102 |
atacttctttgtattcacatgtcggttttcgtgagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatgg |
201 |
Q |
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| T |
31603536 |
atacttctttgtatacacatgtcggttttcgtgagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatgg |
31603635 |
T |
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| Q |
202 |
tcaaggtttcttgccttgtcatgataccggaatctagacgcaaatcatgataaccaatccctgatctct |
270 |
Q |
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| T |
31603636 |
tcaaggtttcttgccttgtcatgataccggaatctagacgcaaatcatgataaccaatccctgatctct |
31603704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 38 - 270
Target Start/End: Original strand, 31593216 - 31593452
Alignment:
| Q |
38 |
tttcggactgttatattactttt-ctatctcttcaagtt-tttgtct--caccgttggtccgacgtcgatacttctttgtattcacatgtcggttttcgt |
133 |
Q |
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| T |
31593216 |
tttctgactattatattactttttctatctcttgaagttctttttcttacaccgttggtccgacatccacacttctttgtataggcgtaatggctttcgt |
31593315 |
T |
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| Q |
134 |
gagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatggtcaaggtttcttgccttgtcatgataccggaa |
233 |
Q |
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| T |
31593316 |
ttgtctaaatagcacaactgattaaaccattggccaaacctttctatcatgaggtacttccacaatggtcaagctttcttgtcttgtcacgaaaccggaa |
31593415 |
T |
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| Q |
234 |
tctagacgcaaatcatgataaccaatccctgatctct |
270 |
Q |
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| T |
31593416 |
tctagatgcaaatcatgataaccagtccctgacctct |
31593452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 31562416 - 31562563
Alignment:
| Q |
121 |
tgtcggttttcgtgagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatggtcaaggtttcttgccttgt |
220 |
Q |
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| T |
31562416 |
tgtcggtttttgtgtgtctaaataacatagtggattaaataattggccgaacctttctatcacaaggtacttccacaatggttacggtttcttgctttgt |
31562515 |
T |
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| Q |
221 |
c---atgataccggaatctagacgcaaatcatgataaccaatccctga |
265 |
Q |
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| T |
31562516 |
tttgatgataccagaatctagacgcaaatcatgataaccaacccctga |
31562563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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