View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5787_high_8 (Length: 244)
Name: NF5787_high_8
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787_high_8 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52135 - 51914
Alignment:
| Q |
1 |
tcactgtttctttccttcaccgtctaaaactaaaatcctattatttggatagttttaacaatttgggggcctttgtaggaacccgtgtcacctctgtggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52135 |
tcactgtttctttccttcaccgtctaaaactaaaatcctattatttggatacttttaacaatttgggggcctttgtaggaacctgtgtcacctctgtggc |
52036 |
T |
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| Q |
101 |
tcagatatatctccaacgattttgtatatatttttcttacaccaattgttttctactgaaatatgtttaggctatnnnnnnnncaatcttactaatcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
52035 |
tcagatatatctccaacgattttgtatatatttttcatacaccaattgttttctactgaaatatgtttaggctat-aaaaaaacaatgttactaatcttt |
51937 |
T |
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| Q |
201 |
gatgattcaagaaacagaggaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
51936 |
gatgattcaagaaacagaggaat |
51914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29345806 - 29345595
Alignment:
| Q |
1 |
tcactgtttctttccttcaccgtctaaaactaaaatcctattatttggatagttttaacaatttgggggcctttgtaggaacccgtgtcacctctgtggc |
100 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
29345806 |
tcactgtttctttccttcaatgcctaaaactaaaatcctattatttggatacttttaacaatttgagggcctttgtaggaacctgtgtcacctctgtggc |
29345707 |
T |
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| Q |
101 |
tcagatatatctccaacgattttgtatatatttttcttacaccaattgttttctactgaaatatgtttaggctatnnnnnnnncaatcttactaatcttt |
200 |
Q |
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| T |
29345706 |
tcagatatatctccaacagttttctatatatttttcatacaccaattgttttctactgaaatatgtttaggctataaaaaaaacaatgttactaatcttt |
29345607 |
T |
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| Q |
201 |
gatgattcaaga |
212 |
Q |
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|||||| ||||| |
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| T |
29345606 |
gatgatccaaga |
29345595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 29888716 - 29888884
Alignment:
| Q |
1 |
tcactgtttctttccttcaccgtctaaaactaaaatcctattatttggatagttttaacaatttgggggcctttgtaggaacccgtgtcacctctgtggc |
100 |
Q |
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|||| ||||||||| ||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29888716 |
tcacagtttctttctttcactgcctaaaactaaaatcctattatttggatactttttacaatttgggggcctttgtaggaacccgtttcacctctgtggc |
29888815 |
T |
|
| Q |
101 |
tcagatatatctccaacgattttgtatatatttttcttacaccaattgttttctactgaaatatgttta |
169 |
Q |
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|||| ||||||||| ||||||| |||| ||||||| ||||||||||||||| |||||||||||||||| |
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| T |
29888816 |
tcagttatatctccgtcgattttctatacatttttcatacaccaattgttttatactgaaatatgttta |
29888884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 29086679 - 29086748
Alignment:
| Q |
24 |
ctaaaactaaaatcctattatttggatagttttaacaatttgggggcctttgtaggaacccgtgtcacct |
93 |
Q |
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||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||| |
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| T |
29086679 |
ctaaaaccaaaatcctattatttgaatacttttaacaatttaggggcctttgtaggaaccggtgtcacct |
29086748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 24257551 - 24257483
Alignment:
| Q |
27 |
aaactaaaatcctattatttggatagttttaacaatttgggggcctttgtaggaacccgtgtcacctct |
95 |
Q |
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|||||||||||| ||| |||| ||| |||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
24257551 |
aaactaaaatcccattttttgaatacttttaataatttgggggcctttgtaggaaccggtgtcacctct |
24257483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 29931932 - 29931990
Alignment:
| Q |
24 |
ctaaaactaaaatcctattatttggatagttttaacaatttgggggcctttgtaggaac |
82 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
29931932 |
ctaaaactaaaatcctattatttgaatacttttaacaatttgcaggcctttgtaggaac |
29931990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24270515 - 24270471
Alignment:
| Q |
1 |
tcactgtttctttccttcaccgtctaaaactaaaatcctattatt |
45 |
Q |
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| T |
24270515 |
tcactgtttctttccttcaccgcctaaaactaaaatcctattatt |
24270471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 43839886 - 43839842
Alignment:
| Q |
125 |
tatatatttttcttacaccaattgttttctactgaaatatgttta |
169 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
43839886 |
tatatatttttcacacaccaatggttttctactgaaatatgttta |
43839842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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