View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5787_low_1 (Length: 725)
Name: NF5787_low_1
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 383 - 713
Target Start/End: Original strand, 30164281 - 30164611
Alignment:
| Q |
383 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
30164281 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatggtgtctgttcggcgatgtgggatgtgaaatcgatggcttactcttatcgcccttccc |
30164380 |
T |
|
| Q |
483 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
582 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30164381 |
taggggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
30164480 |
T |
|
| Q |
583 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtctaggt |
682 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
30164481 |
tttgcactctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtttgggaatctttatccttgcgtctgggt |
30164580 |
T |
|
| Q |
683 |
tctctgcgcggtgctcttctgtgtgtctgtg |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
30164581 |
tctctgcgcggtgctcttctgtgtgtctgtg |
30164611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 287; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 383 - 713
Target Start/End: Original strand, 7660263 - 7660593
Alignment:
| Q |
383 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
7660263 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatggtgtctgttcggcgatgtgggatttgaaattgatggcttactcttatcgcccttcac |
7660362 |
T |
|
| Q |
483 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
582 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7660363 |
aagaggcgtcaggtggattgttgactgcgtgggatttagcggaggtggaagtgtagtctactgtttatatggagcatgttttggttattcatggtcgttt |
7660462 |
T |
|
| Q |
583 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtctaggt |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
7660463 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtctgggt |
7660562 |
T |
|
| Q |
683 |
tctctgcgcggtgctcttctgtgtgtctgtg |
713 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
7660563 |
tctctacgcggtgctcttctgtgtgtctgtg |
7660593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 39088490 - 39088232
Alignment:
| Q |
1 |
gggatccattttcatttatcacaacaatatcccaacgnnnnnnnnn-tcagactaaagatgttgccttgatggtctaagcagtgacctcactcaaattaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39088490 |
gggatccattttcatttatcacaacaatatcccaacgaaaaaaaaaatcagactaaagatgttgccttgatggtctaagcagtgacctcactcaaattaa |
39088391 |
T |
|
| Q |
100 |
gatgggacaaaacgttaatttcaaatatatgtataccctgcaagaccaaagttggcatgacttggtcattcaagtaatacctcatttgctt-nnnnnnnc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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|
| T |
39088390 |
gatgggacaaaacgttaatttcaaatatatgtataccctgcaagaccaaagttggcatgacttgttcattcaagtaatacctcatttgcttaaaacaaac |
39088291 |
T |
|
| Q |
199 |
atgtcacgtttgcatttctcactatttcaaaataattatcacgttaaaatatcaagaca |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39088290 |
atgtcacgtttgcatttctcactatttcaaaataattatcacgttaaaatatcaagaca |
39088232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 39088147 - 39088104
Alignment:
| Q |
341 |
gacaacctaaaataattgtcaatgtgcacaccgtatctacaaat |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39088147 |
gacaacctaaaataattgtcaatgtgcacaccgtatctgcaaat |
39088104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 387 - 678
Target Start/End: Original strand, 45566793 - 45567084
Alignment:
| Q |
387 |
tgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttcccaaga |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | | |||| ||||||||||| |
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|
| T |
45566793 |
tgtgcttgcaagaaactaagttacaagtgtgtgatgatggtgtctgttcggcgatgtgggatttgaaatcgatggcttattttcatcgtccttcccaaga |
45566892 |
T |
|
| Q |
487 |
ggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttttttg |
586 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||| |||| | ||||||||||||||||||||||| || |||||| |
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|
| T |
45566893 |
ggcgtcaggtgggttgttgaccgcgtgggatttaacagaggtggaggtgtggtctactgcttcctttgagcatgttttggttattcatggccgatttttg |
45566992 |
T |
|
| Q |
587 |
caatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtct |
678 |
Q |
| |
|
||||| |||||||||| || |||| ||||| || || || ||||| ||||| |||||||||||| | |||||||| |||||||||||||| |
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|
| T |
45566993 |
aaatctgatgaagagttccatctgttaaatgtttatgctccttgtgacaatcgagctaggcgggtgttatgggaatccttatccttgcgtct |
45567084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 383 - 674
Target Start/End: Original strand, 10483912 - 10484203
Alignment:
| Q |
383 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
482 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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|
| T |
10483912 |
attgtgtgcttgcaagaaactaaattacaagtgtgcgatgatggtatctgttcggcgatgtgggatttgaaatcgatggctttttcttatcgtccttccc |
10484011 |
T |
|
| Q |
483 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
582 |
Q |
| |
|
||| ||||||||| |||||| ||||||| |||||||||||||||||||| | |||||||||||||||| | ||||||||||| |||||||||||||| || |
|
|
| T |
10484012 |
aaggggcgtcaggcgggttgctgactgcatgggatttagcggaggtggaggcgtggtctactgtttccttagagcatgttttagttattcatggtcggtt |
10484111 |
T |
|
| Q |
583 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgc |
674 |
Q |
| |
|
| || |||||||||||||||| ||||||||||| | || || || ||||| ||||||||||| |||| | |||||||| ||||| |||| |
|
|
| T |
10484112 |
tctgaaatctaatgaagagttccatttgtttaatatttatgctccttgtgactttcgggctaggcaggtgttatgggaatccttatctttgc |
10484203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 383 - 675
Target Start/End: Complemental strand, 20472037 - 20471745
Alignment:
| Q |
383 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
482 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||| ||||||| ||||||||||| || |||||||| | ||| |||||||| || ||||| ||||| | |
|
|
| T |
20472037 |
attgtatgcttgcatcaaactaagttgcaagtgtttgatgatggtgtctgttcgtcgttgtgggatctacaattgatggcttattcctatcgtccttcac |
20471938 |
T |
|
| Q |
483 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccg-tggagcatgttttggttattcatggtcgtt |
581 |
Q |
| |
|
||| || ||||||||| ||||||||||||| |||| | | |||||||| ||||||||||||||||| | |||||||| || |||||||||||||| | |
|
|
| T |
20471937 |
aag-ggtgtcaggtggcttgttgactgcgtaggatatgtctgaggtggagatgtggtctactgtttccccttgagcatgtcttagttattcatggtcggt |
20471839 |
T |
|
| Q |
582 |
ttttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcg |
675 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||| || || || ||||| ||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
20471838 |
ttttgaaatttaatgaagagttccatttgtttaatgtttatgctccatgtgacaatcgggctaggcaggttttgtgggaatccttatccttgcg |
20471745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 383 - 675
Target Start/End: Complemental strand, 8719417 - 8719125
Alignment:
| Q |
383 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
482 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||| || | |||||| |||||||||||||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
8719417 |
attgtgtgcttgcaagaaacgaaattacaagtgtgcgatgatggtatatgttcgtcgatgtgggatttgaaattgatggctttttcttttcgtccttccc |
8719318 |
T |
|
| Q |
483 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
582 |
Q |
| |
|
||| ||||||||| |||||||||| || |||||||||| |||||||||| |||||||||||||||||| | |||||||||| |||||||||||||| || |
|
|
| T |
8719317 |
aaggggcgtcaggcgggttgttgaatgtgtgggatttaacggaggtggatgtgtggtctactgtttccttaaagcatgttttagttattcatggtcggtt |
8719218 |
T |
|
| Q |
583 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcg |
675 |
Q |
| |
|
| || |||||||||||||||| || |||||||| | || || || ||||| || ||||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
8719217 |
tctgaaatctaatgaagagttccatctgtttaatatttatgctccttgtgactctcaggctaggcgggtgttatgggaatccttatctttgcg |
8719125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 634
Target Start/End: Complemental strand, 29306343 - 29306297
Alignment:
| Q |
588 |
aatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgat |
634 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||| |||||||||||| |
|
|
| T |
29306343 |
aatctaatgaagagttttatatgttcaatatgtatgccccgtgtgat |
29306297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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