View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5787_low_6 (Length: 251)
Name: NF5787_low_6
Description: NF5787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5787_low_6 |
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| [»] scaffold0054 (1 HSPs) |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 52441 - 52202
Alignment:
| Q |
12 |
atgaagtgtgaccatgagaagttatgaaatcttgcttaggcttcgagaaatctctgagcacacaaaagatgagtagatttagaaaatagtgtacaaattt |
111 |
Q |
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| T |
52441 |
atgaagtgtgaccatgagaagttatgaaatcttgcttaggcttcgagaaatctctgagcacacaaaagatgagtagatttagaaaatagtgtacaaattt |
52342 |
T |
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| Q |
112 |
ggttttaataaacaactttaagccttcactcttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaa |
211 |
Q |
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| T |
52341 |
ggttttaagaaacaactttgagccttcactcttcactgtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaa |
52242 |
T |
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| Q |
212 |
agtgatgttaaggaatcacgaaaccagtatggttcttcac |
251 |
Q |
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| T |
52241 |
agtgatgttaaggaatcacgaaaccagtatggttcttcac |
52202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 29346063 - 29345873
Alignment:
| Q |
56 |
gagaaatctctgagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaataaacaactttaagccttcactcttcactgtaatca |
155 |
Q |
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| T |
29346063 |
gagaaatctatcagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaagaaaaaactttaagccttcactcttcactgtaatcg |
29345964 |
T |
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| Q |
156 |
atccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaaagtgatgttaaggaatcacgaaaccagtatggttcttcac |
251 |
Q |
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| T |
29345963 |
atccattttgtttcgcttgaatcctggtattattgattaaacattttgcatagaaaagtg-----aaggaatcaggaaaccagtatggttcttcac |
29345873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 24270781 - 24270619
Alignment:
| Q |
53 |
ttcgagaaatctctgagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaataaacaactttaagccttcactcttcact---- |
148 |
Q |
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| T |
24270781 |
ttcgagaaatctatcagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttacgaaacaacttttagtcttcactcttcacttcag |
24270682 |
T |
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| Q |
149 |
-gtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaa |
210 |
Q |
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| T |
24270681 |
tgtaacctatccattttgattcgcttgactcctggtattattgattaagcattttgcatagaa |
24270619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 29888450 - 29888649
Alignment:
| Q |
53 |
ttcgagaaatctctgagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaataaacaactttaagccttcactcttcact---- |
148 |
Q |
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| T |
29888450 |
ttcgagaaatctatcagcatacaaaagatgagtagatttagaaaatagtgtacaaatttggttttacgaaacaacttttagtcttcactcttcacttcag |
29888549 |
T |
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| Q |
149 |
-gtaatcaatccattttgtttcgcttgtttcctggtattattgattaagcattttgcatagaaaagtgatgttaaggaatcacgaaaccagtatggttct |
247 |
Q |
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| T |
29888550 |
tgtaacctatccattttgtttcgcttgactcctggtattattgattatgcattttgcatagaa---tca-gtaaaggaatcgagaaaccagtatggttct |
29888645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 29931703 - 29931832
Alignment:
| Q |
61 |
atctctgagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaataaacaactttaagccttcactcttcactgtaatcaatcca |
160 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||||| |||||||||| || ||||| |
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| T |
29931703 |
atctatgagcacacaaaagatgagtagatttagaaaatagtgtacgaatttggttttacaaaacaacttcaagtcttca--cttcactgtagtctatcca |
29931800 |
T |
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| Q |
161 |
ttttgtttcgcttgtttcctggtattattgat |
192 |
Q |
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| T |
29931801 |
ttttgtttagcttgaatcctggtattattgat |
29931832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 24257800 - 24257642
Alignment:
| Q |
57 |
agaaatctctgagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaataaacaactttaagccttcactcttcactgtaatcaa |
156 |
Q |
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| T |
24257800 |
agaaatctatgagcacacaaaagatgagtagatttagaaaatagtgtacgaatttggttttacaaaacaacttcaagtcttca--cttctttgtagtcta |
24257703 |
T |
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| Q |
157 |
tccattttgtttcgcttgtttcctggtattattgat-taagcattttgcatagaaaagtga |
216 |
Q |
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| T |
24257702 |
tccattttctttcgcttgaatcctggtattattgataaaagattttttcatagaaaagtga |
24257642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 29086442 - 29086564
Alignment:
| Q |
67 |
gagcacacaaaagatgagtagatttagaaaatagtgtacaaatttggttttaataaacaactttaagccttcactcttcactgtaatcaatccattttgt |
166 |
Q |
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| T |
29086442 |
gagcacacaaaagatgagtagtttta-aaaatagtgtatgaatttggttttacaaaacagcttcaagtcttcact--tcattgtagtctatccattttgt |
29086538 |
T |
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| Q |
167 |
ttcgcttgtttcctggtattattgat |
192 |
Q |
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| T |
29086539 |
ttcacttgaatcctggtattattgat |
29086564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 29364553 - 29364506
Alignment:
| Q |
57 |
agaaatctctgagcacacaaaagatgagtagatttagaaaatagtgta |
104 |
Q |
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| T |
29364553 |
agaaatgtatgagcacacaaaagatgagtagatttagaaaatagtgta |
29364506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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