View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788-Insertion-1 (Length: 1036)
Name: NF5788-Insertion-1
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788-Insertion-1 |
 | |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 763; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 8 - 934
Target Start/End: Complemental strand, 31663556 - 31662639
Alignment:
| Q |
8 |
aaatcaacctcaagacaaactgaacatgaaactatattgccacttgtgattgagactattgggatcttttcaaccgaagctcctggtaagcctgtgtcac |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663556 |
aaatcaacctcaagacaaactgaacatgaaactctattgccacttgtgattgagactattgggatcttttcaaccgaagctcctggtaagcctgtgtcac |
31663457 |
T |
|
| Q |
108 |
atccaatgtcaaatatattttgaaactcatagaagttcatttcacctgcacccatctgagaatagagagcaaattaa-ggcataatataagtaagtt-gt |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| || |
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| T |
31663456 |
atccaatgtcaaatatattttgaaactcatagaagttcatttcacctgcacccatctgagaatggagagcaaattaaaggcataatatatataagcaagt |
31663357 |
T |
|
| Q |
206 |
gtatattcaattattcataaccaaaatttatgtctctcaatatggataaatcaatttaattacctgactttgaaccgcattcaacatggcttgaccaatc |
305 |
Q |
| |
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|||| |||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663356 |
gtattttcagtaattcataaccaaaatttatgtctctcaccgt----------atttaattacctgactttgaaccgcattcaacatggcttgaccaatc |
31663267 |
T |
|
| Q |
306 |
ctttcacgtacaagtctcccactcactaggctagcaataatatcaatctgcatattatacagtaaacacaaaaatcattatcagaacacacaacatgcta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663266 |
ctttcacgtacaagtctcccactcactaggctagcaataatatcaatctgcatattatacagtaaacacaaaaatcattatcagaacacacaacatgcta |
31663167 |
T |
|
| Q |
406 |
gtgaaaagggcacgactaatggctctgtttgactagataagttttcgagtttgcttcgttatacgctcgtattaccaaaacagacctctttgataacaaa |
505 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663166 |
gtgaaaagggcactactaatggctctgtttgactagataagttttcgagtttgcttcgttatacgctcgtattaccaaaacagacctctttgataacaaa |
31663067 |
T |
|
| Q |
506 |
ttttttcacggacttgtaacattttttaataagctacgttcaatattataatttttatctcaattttacccttgttatcttaattaaaaatatgttttta |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663066 |
ttttttcacggacttgtaacattttttaataagccactttcaatattataatttttatctcaattttacccttgttatcttaattaaaaatatgttttta |
31662967 |
T |
|
| Q |
606 |
tgttgtttcatatttatcaattgctaattttatcgaacattacgtcgagatatgtcttgaaatctcatgttggaagttggaaattttttgttgcattctg |
705 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31662966 |
tgttgtttcatatttatcaactattaattttatcgaacattacgtcgagatatgtcttgaaatctcatattggaagttggaaattttttgttgcattctg |
31662867 |
T |
|
| Q |
706 |
tcccatgcgctaggcgcaacttgtttggtgtttcaggaggttgtgtctctgggtgctgcgctaggcgtttgagcactatgcactaggcgtaggtctgtgt |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31662866 |
tcccatgcgctaggcgcaacttgtttggtgtttcaggaggttgtgtctctgggtgctgcactaggcgtttgagcactatgcactaggcgtaggtctgtgt |
31662767 |
T |
|
| Q |
806 |
ctagttctataatataggctatttcaacacaattttgaggaagaagagtgagacatactagggtttatcaaaagggaagaattttaggcgatcaaaggct |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
31662766 |
ctagttctataatataggctatttcaacacaattttgaggaagaagagtgagacaaactagggtttatcaaaa-ggaagaattttaagcgatcaaaggct |
31662668 |
T |
|
| Q |
906 |
-agaatttagtattttttggactattctct |
934 |
Q |
| |
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||||||||||| |||||||| |||||||| |
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| T |
31662667 |
aagaatttagta-tttttggaatattctct |
31662639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 559 - 597
Target Start/End: Complemental strand, 32448181 - 32448143
Alignment:
| Q |
559 |
tttatctcaattttacccttgttatcttaattaaaaata |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
32448181 |
tttatctcaattttacccttgttatcttaattaaaaata |
32448143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 609
Target Start/End: Original strand, 10232510 - 10232549
Alignment:
| Q |
570 |
tttacccttgttatcttaattaaaaatatgtttttatgtt |
609 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||| |
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| T |
10232510 |
tttacccttgtaatcttaattaaaaatatatttttatgtt |
10232549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 9084440 - 9084533
Alignment:
| Q |
266 |
tacctgactttgaaccgcattcaacatggcttgaccaatcctttcacgtacaagtctcccactcactaggctagcaataatatcaatctgcata |
359 |
Q |
| |
|
||||||||||||||| ||| ||| ||| || |||| ||||| ||||| |||||||| ||||||| | |||| |||||| ||||||||||||| |
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| T |
9084440 |
tacctgactttgaacagcactcagcattgcaggacctatcctctcacgcacaagtcttccactcaacaagctaacaataacatcaatctgcata |
9084533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 590
Target Start/End: Complemental strand, 5657115 - 5657082
Alignment:
| Q |
557 |
tttttatctcaattttacccttgttatcttaatt |
590 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
5657115 |
tttttatctcaattttaccattgttatcttaatt |
5657082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 609
Target Start/End: Original strand, 9233 - 9272
Alignment:
| Q |
570 |
tttacccttgttatcttaattaaaaatatgtttttatgtt |
609 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||| |
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| T |
9233 |
tttacccttgtaatcttaattaaaaatatatttttatgtt |
9272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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