View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788-Insertion-6 (Length: 531)
Name: NF5788-Insertion-6
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788-Insertion-6 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 182 - 531
Target Start/End: Complemental strand, 5034369 - 5034017
Alignment:
| Q |
182 |
tagatcaatatggtatgatattagagatgagtgtatagataaaatttgtataaacagaaagaat---gttctaatgtctatgctagtgttgtctctcgtg |
278 |
Q |
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| T |
5034369 |
tagatcaatatggtatgatattagagatgagtgtatagataaaatttgtataaacagaaagaatattgttctagtgtctatgctagtgttgtctctcgtg |
5034270 |
T |
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| Q |
279 |
gacagtgaaagataacagtttgttcaaattccaccacgctatagttttgttatataaatagtgtgtcttgaaataatagtgatttgttcaaatttgtcta |
378 |
Q |
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| T |
5034269 |
gacagtgaaagataacagtttgttcaaattccaccacgctatagttttgttataaaaatagtgtgtcttgaaataatagtgatttgttcaaatttgtcta |
5034170 |
T |
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| Q |
379 |
tagcatttttatggccaatcagtttaacttgtcacacattaactatacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgct |
478 |
Q |
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| T |
5034169 |
tagcatttttatggccaatgagtttaacttgtcacacattaactatacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgct |
5034070 |
T |
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| Q |
479 |
gttcaggttctggatacaatatttcccaatgtatcgatcatttgtgttacatg |
531 |
Q |
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| T |
5034069 |
gttcaggttctggatacaatatttcccaatgtatcgatcatttgtgttacatg |
5034017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 45 - 527
Target Start/End: Complemental strand, 5040142 - 5039670
Alignment:
| Q |
45 |
atattcaatcaatagaaagcagtggtcagattgttgagaacattttaagttggtggtggtcctgtaatataattgagccatataaattaggcaaaaa--- |
141 |
Q |
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| T |
5040142 |
atattcaatcaatagaaggcagtggtcacagtgttgagaactttttatgtaggtggtggtcctgtaatataattgaaccata--aattagacaaaaataa |
5040045 |
T |
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| Q |
142 |
atatagattttattgatgggannnnnnn--aatctctgaatctagatcaatatggtatgatattagagatgagtgtatagataaaatttgtataaacaga |
239 |
Q |
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| T |
5040044 |
atggaaatttaatttatggtatttttttttaatatctgaatctagatcaatatggtacaatattagagat------------aaaatttgtataaacaga |
5039957 |
T |
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| Q |
240 |
aagaatgttctaatgtctatgctagtgttgtctctcgtggacagtgaaagataacagtttgttcaaattccaccacgctatagttttgttatataaatag |
339 |
Q |
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| T |
5039956 |
aaaaatgttttctagtgttttccagtgttgtcaatcacagatagtgaaagataacagtttgttcaaattccaccacgctatagttt-gttatataaatag |
5039858 |
T |
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| Q |
340 |
tgtgtcttgaaataatagtgatttgttcaaatttgtctatagcatttttatggccaatcagtttaacttgtcacacattaactatacaaaggcagatata |
439 |
Q |
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| T |
5039857 |
tgtgtcttgaaataatagtgatttgttcaaatttctatatagcatttttatggccaatgagtttaacttgtcacacattaactttacataggcagatata |
5039758 |
T |
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| Q |
440 |
attttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtatcgatcatttgtgtta |
527 |
Q |
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| T |
5039757 |
attttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaaggtattgatcatttgtgtta |
5039670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 5034517 - 5034374
Alignment:
| Q |
8 |
cactcatcttctttttccttctaatgctgctgctgctatattcaatcaatagaaagcagtggtcagattgttgagaacattttaagttggtggtggtcct |
107 |
Q |
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| T |
5034517 |
cactcatcttctttttccttctaatgctgctgctgctatattcaatcaatagaaagcagtggtcacattgttgagaacattttaagttggtggtggtcct |
5034418 |
T |
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| Q |
108 |
gtaatataattgagccatataaattaggcaaaaaatatagattt |
151 |
Q |
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| T |
5034417 |
gtaatataattgagccatataaattaggcaaaaaatgtagattt |
5034374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 2524437 - 2524401
Alignment:
| Q |
8 |
cactcatcttctttttccttctaatgctgctgctgct |
44 |
Q |
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| T |
2524437 |
cactcatcttcttttgccttctaatgctgctgctgct |
2524401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 2489381 - 2489345
Alignment:
| Q |
8 |
cactcatcttctttttccttctaatgctgctgctgct |
44 |
Q |
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| T |
2489381 |
cactcatcttcttttaccttccaatgctgctgctgct |
2489345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 424 - 512
Target Start/End: Complemental strand, 25096449 - 25096361
Alignment:
| Q |
424 |
tacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtat |
512 |
Q |
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| T |
25096449 |
tacataggcggatatagttctgcgaggatactctggttggaatacaaggcgcgctgtgcaggttctggatacaatttttcccaaggtat |
25096361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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