View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788-Insertion-9 (Length: 331)
Name: NF5788-Insertion-9
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 25041013 - 25041339
Alignment:
| Q |
4 |
aacaaatattactagttaaaatttggttctaacaaccgagttatgaatcatatgcttaaggattcactgcccaacaactaaggattccaacagacaacta |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25041013 |
aacaaatattactagttaaaatttggttctaacaaccgagttatgaatcatatgcttaaggattcactgcccaacaactaaggattccaacagacaacta |
25041112 |
T |
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| Q |
104 |
ctccaaattgttaaattagagaactaccaataatcccatagactttgggtcccatagtttattcttagtttgtaccaactatttaaatagttgcttttaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25041113 |
ctccaaattgttaaattagagaactaccaataatcccatagactttgggtcccatagtttattcttagtttgtaccaac-atttaaatagttgcttttaa |
25041211 |
T |
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| Q |
204 |
tcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgaccatgactttaagtacagtaaaag |
303 |
Q |
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| T |
25041212 |
tcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgatcatgactttaagtacagaaaaag |
25041311 |
T |
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| Q |
304 |
aagtccataccttgatctgtctgtttga |
331 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
25041312 |
aagtcaataccttgatctgtctgtttga |
25041339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 14485114 - 14484788
Alignment:
| Q |
4 |
aacaaatattactagttaaaatttggttctaacaaccgagttatgaatcatatgcttaaggattcactgcccaacaactaaggattccaacagacaacta |
103 |
Q |
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| T |
14485114 |
aacaaatattactagttaaaatttggttctaacaaccgagctatgaatcatatgcttaaggattcactgcccaacaactaaggattccaacagacaacta |
14485015 |
T |
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| Q |
104 |
ctccaaattgttaaattagagaactaccaataatcccatagactttgggtcccatagtttattcttagtttgtaccaactatttaaatagttgcttttaa |
203 |
Q |
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| T |
14485014 |
ctccaaattgttaaattagagaactaccaataatcccatagactttgggttccatagtttattcttagtttgtaccaac-atttaaatagttgcttttaa |
14484916 |
T |
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| Q |
204 |
tcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgaccatgactttaagtacagtaaaag |
303 |
Q |
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| T |
14484915 |
tcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgaccatgactttaagtacaaaaaaag |
14484816 |
T |
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| Q |
304 |
aagtccataccttgatctgtctgtttga |
331 |
Q |
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| T |
14484815 |
aagtcaataccttgatctgtctgtttga |
14484788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 40419425 - 40419366
Alignment:
| Q |
272 |
acttttgaccatgactttaagtacagtaaaagaagtccataccttgatctgtctgtttga |
331 |
Q |
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|||||||| ||||||||||| ||||| |||||||||| ||||||||||| ||| |||||| |
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| T |
40419425 |
acttttgagcatgactttaactacagaaaaagaagtcaataccttgatccgtccgtttga |
40419366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 49945124 - 49945450
Alignment:
| Q |
4 |
aacaaatattactagttaaaatttggttctaacaaccgagttatgaatcatatgcttaaggattcactgcccaacaactaaggattccaacagacaacta |
103 |
Q |
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| T |
49945124 |
aacaaatattactagttaaaatttggttctaacaaccgagttatgaatcatatacttaaggattcactgtccaacaactaaggattccaacagacaacta |
49945223 |
T |
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| Q |
104 |
ctccaaattgttaaattagagaactaccaataatcccatagactttgggtcccatagtttattcttagtttgtaccaactatttaaatagttgcttttaa |
203 |
Q |
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| T |
49945224 |
ctccaaattgttaaattagagaactaccaataatcccatagactttgggtcccatagtttattcttagtttgtaccaac-atttaaatagttgcttttaa |
49945322 |
T |
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| Q |
204 |
tcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgaccatgactttaagtacagtaaaag |
303 |
Q |
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| T |
49945323 |
tcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgaccatgactttaagtacataaaaag |
49945422 |
T |
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| Q |
304 |
aagtccataccttgatctgtctgtttga |
331 |
Q |
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||||| ||||||||||| |||||||||| |
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| T |
49945423 |
aagtcaataccttgatccgtctgtttga |
49945450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 99 - 331
Target Start/End: Original strand, 16727262 - 16727496
Alignment:
| Q |
99 |
aactactccaaattgttaaattagagaactaccaataatcccatagactttgggtc---ccatagtttattcttagtttgtaccaactatttaaatagtt |
195 |
Q |
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| T |
16727262 |
aactactccaaattgttaaattagagaactaccaataatcccataaactttgggtcgacccatagtttattcttagtttgtaccaac-atttaaatagtt |
16727360 |
T |
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| Q |
196 |
gcttttaatcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgaccatgactttaagtac |
295 |
Q |
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| T |
16727361 |
gcttttaatcatcaagaattcctaccactattatccacctcatcatattaattttcattatcttttgcaataactaacttttgaccatgactttaagtac |
16727460 |
T |
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| Q |
296 |
agtaaaagaagtccataccttgatctgtctgtttga |
331 |
Q |
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|| |||||||||| ||||||||||| || ||||||| |
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| T |
16727461 |
agaaaaagaagtcaataccttgatccgtatgtttga |
16727496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 16727137 - 16727248
Alignment:
| Q |
4 |
aacaaatattactagttaaaatttggttctaacaaccgagttatgaatcatatgcttaaggattcactgcccaacaactaaggattccaacagacaacta |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
16727137 |
aacaaatattactagttaaaatttggttctaacaaccgagttatgaatcgtatgcttaaggattcactgcccaacaactaaggactccaacagataacta |
16727236 |
T |
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| Q |
104 |
ctccaaattgtt |
115 |
Q |
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|||||||||||| |
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| T |
16727237 |
ctccaaattgtt |
16727248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 15795451 - 15795410
Alignment:
| Q |
75 |
caacaactaaggattccaacagacaactactccaaattgtta |
116 |
Q |
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|||||||| |||||| ||||||||||||||||||| |||||| |
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| T |
15795451 |
caacaacttaggattgcaacagacaactactccaacttgtta |
15795410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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