View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_high_15 (Length: 306)
Name: NF5788_high_15
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 35623363 - 35623072
Alignment:
| Q |
1 |
tgtctttctttttagctgtactctatagtcatcttgttgccnnnnnnnaagggatttcattgcctcttttcaatacattttagtagtaacgtaatgttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35623363 |
tgtctttctttttagctgtactctatagtcatcttgttgcctttttttaagggatttcattgcctcttttcaatacattttagtagtaacgtaatgttat |
35623264 |
T |
|
| Q |
101 |
aaaaatctgtactgtgtagtcgtttggattttcttattaataattttattgatctttctataagaataattttattggcttttagtaatagcaatggaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35623263 |
aaaaatctgtactgtgtagtcgtttggattttcttattaataattttattgatctttctataagaataattttattggcttttagtaatagcaatggaag |
35623164 |
T |
|
| Q |
201 |
gtccggtgcaaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagt |
292 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35623163 |
gtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagt |
35623072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 14542740 - 14542845
Alignment:
| Q |
187 |
aatagcaatggaaggtccggtgcaaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaa |
286 |
Q |
| |
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|||||||||||||||| | || |||||| |||||||||||| || ||||||||||||||||||||| ||||||| || |||||||||||||| |||||| |
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| T |
14542740 |
aatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaa |
14542839 |
T |
|
| Q |
287 |
aaaagt |
292 |
Q |
| |
|
|||||| |
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| T |
14542840 |
aaaagt |
14542845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 292
Target Start/End: Complemental strand, 14580852 - 14580742
Alignment:
| Q |
182 |
ttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatca |
281 |
Q |
| |
|
|||| |||||||||||||||| | || |||||| |||||| ||||| || ||||||||||||||||||||| ||||||| || |||||||||||||| | |
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| T |
14580852 |
ttagcaatagcaatggaaggttcagtacaaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaatta |
14580753 |
T |
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| Q |
282 |
tagaaaaaagt |
292 |
Q |
| |
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||||||||||| |
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|
| T |
14580752 |
tagaaaaaagt |
14580742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 29678868 - 29678948
Alignment:
| Q |
113 |
tgtgtagtcgtttggattttcttattaataattttattgat-ctttctataagaataattttattggcttttagtaatagc |
192 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||| |
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| T |
29678868 |
tgtgtagtcgtttgggttttcttattaataattatattaattctttctataagaataattttattggcttttagtagtagc |
29678948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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