View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_high_18 (Length: 210)
Name: NF5788_high_18
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 6550956 - 6551132
Alignment:
| Q |
18 |
ttctattgcatttcgttatatatatatttttagcataatgcacgtttgttttaattcgcttgtttctgtttcataatatttatgttattttgaacatatc |
117 |
Q |
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| T |
6550956 |
ttctattgcatttcgttgtatatatatttttagcataatgcacgtttgttttaattcgcttgtttctgtttcataatatatatgttattttgaacatatc |
6551055 |
T |
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| Q |
118 |
taaatctcaatttcaatatccatgttttataaatttaaacttaaatttggaaaagggccgtattgtaaggaatattt |
194 |
Q |
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| T |
6551056 |
taaatctcaatttcaatatccatgttttataaatttaaacttaaatttggaaaagggccgtattgtaaggaatattt |
6551132 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 1497500 - 1497540
Alignment:
| Q |
65 |
gttttaattcgcttgtttctgtttcataatatttatgttat |
105 |
Q |
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| T |
1497500 |
gttttaatttgcttgtttcaatttcataatatttatgttat |
1497540 |
T |
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