View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_high_3 (Length: 548)
Name: NF5788_high_3
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 6352033 - 6352560
Alignment:
| Q |
1 |
atgtaatcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacatttttgaca |
100 |
Q |
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| T |
6352033 |
atgtaatcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacatttttgaca |
6352132 |
T |
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| Q |
101 |
aattgaccattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatatgttgcattttattacaaatgacagaattatta |
200 |
Q |
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| T |
6352133 |
a-ttgaccattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatagtttgcattttattacaaatgacagaattatta |
6352231 |
T |
|
| Q |
201 |
tttgacgtaacgcctaaagtataaggagatgaatgcactgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagtatacaa |
300 |
Q |
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| T |
6352232 |
tttgacgtaacgcctaaagtataaggagatgaatgcagtgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagtatacaa |
6352331 |
T |
|
| Q |
301 |
gccattgcacctagggatccacgagtgtttgctttgtggcgtgtgatttcacaaacacactgcattattcttagcaaatttagacattgacatcaaattt |
400 |
Q |
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| T |
6352332 |
gccattgcacctagggatccacgagcgcttgctttgttgcgtgtgatttcacaaacacactgcattattcttagcaaatttagacattgacatcaaattt |
6352431 |
T |
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| Q |
401 |
ttggtaaaagaagcaacatgaagataaagaagttgatttaaataacacagaaatatnnnnnnnnttaaatcgaggctttaattgcggtgatagactgcaa |
500 |
Q |
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| T |
6352432 |
ttggtaaaagaagcaacatgaagataaagaagttgatttaaataacacagaaatataaaaaaaattaaatcgaggctttaattgcggtcat-gactgcaa |
6352530 |
T |
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| Q |
501 |
tttaaaaccatgttgaggtctacttcattt |
530 |
Q |
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| T |
6352531 |
tttaaaaccatgttgaggtctacttcattt |
6352560 |
T |
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