View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_high_5 (Length: 490)
Name: NF5788_high_5
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 107 - 465
Target Start/End: Complemental strand, 53842630 - 53842272
Alignment:
| Q |
107 |
ttctgttcataatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttg |
206 |
Q |
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| T |
53842630 |
ttctgttcagaatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttg |
53842531 |
T |
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| Q |
207 |
gttggtggtgctagaagatttgaattaactggtccttcgatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttag |
306 |
Q |
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| T |
53842530 |
gttggtggtgctagaagatttgaattaactggtccttcgatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttag |
53842431 |
T |
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| Q |
307 |
actcagatgcgttcaaattctcattgttgaagcttgcaccaaaagttgccgccgttaacatatttcaccctcaactgttgccggagaatgagtcttccgt |
406 |
Q |
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| T |
53842430 |
actcagatgcgttcaaattctcattgttgaagcttgcaccaaaagttgccgccgttaacatatttcaccctcaaccgttgcaggagaatgagtcttccgt |
53842331 |
T |
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| Q |
407 |
tcgtgttctcacggcgcagaactcgcctaacggaattcaggtataaatgactatttccc |
465 |
Q |
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| T |
53842330 |
tcgtgttctcacggcgcagaactcgcctaacggaattcaggtataaatgactatttccc |
53842272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 117 - 448
Target Start/End: Complemental strand, 53844320 - 53843992
Alignment:
| Q |
117 |
aatcttctttccaaccttccttttatcaacactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttggttggtggtg |
216 |
Q |
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| T |
53844320 |
aatcttctgttcaacattccttacatcaacacggctaattc---accttcgaaagatgaattgttacgatccaaaattgcggtgtgtttggttggtggtg |
53844224 |
T |
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| Q |
217 |
ctagaagatttgaattaactggtccttcgatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttagactcagatgc |
316 |
Q |
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||||||| || |||||||| || ||||| |||||||| |||||| | |||||||| || ||||| |||||||| |||||||||| |||||||||||| | |
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| T |
53844223 |
ctagaaggttcgaattaacgggaccttcaatattggaaatgatactgaaagagtacccgaattcggatcttttcttgcatagtccgttagactcagattc |
53844124 |
T |
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| Q |
317 |
gttcaaattctcattgttgaagcttgcaccaaaagttgccgccgttaacatatttcaccctcaactgttgccggagaatgagtcttccgttcgtgttctc |
416 |
Q |
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||||| |||||||| | ||| |||| ||||| ||||| || ||||| ||||||| ||||||| ||| | |||||||||||||| |||||||||||| |
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| T |
53844123 |
attcaagttctcatttctcaagtttgcgccaaatgttgctgctgttaaaatatttcgccctcaatagttccaggagaatgagtcttttgttcgtgttctc |
53844024 |
T |
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| Q |
417 |
acggcgcagaactcgcctaacggaattcaggt |
448 |
Q |
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| T |
53844023 |
acggcgcacaagttgcctaacggaatccaggt |
53843992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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