View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_high_8 (Length: 388)
Name: NF5788_high_8
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 36524650 - 36525013
Alignment:
| Q |
16 |
cactagtcacatattgtcttcttaggaatgattcaatttcttcttcaaagtggtaatcaatatttaggcgctgcatggcatcaatcatatacaaaccttt |
115 |
Q |
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| T |
36524650 |
cactagtcacatattgtcttcttaggaatgattcaatttcttcttcaaagtggtaatcaatatttaggcgctgcatggcatcaatcatatacaaaccttt |
36524749 |
T |
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| Q |
116 |
gagtgaattttcaccaacgttcctaagttcatgcttaaccacctcaagtttctcagaatgattattactgctgttgagatctctctgtcaaagaacttcc |
215 |
Q |
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| T |
36524750 |
gagtgaattttcaccaacgtttctaagttcatgcttaaccaactcaagtttctcagaatgattattactgctgctgagatctctctgtcaaagaacttcc |
36524849 |
T |
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| Q |
216 |
agaattaattcaattaagttgatgacttataattaaaagaatattggcaaagacagtagtaaattaaaattttgacatacatgttttatgagtgtgctac |
315 |
Q |
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| T |
36524850 |
agaattaattcaattaagttgatgacttataattaaaagaatattggcaaagacagtagtaaattaaaattttgacatacatgttttatgagtgtgctac |
36524949 |
T |
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| Q |
316 |
gcctttcttcttcagcactaatgctccacttgttagcaatgtgaatagaatcaagcttgatatt |
379 |
Q |
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| T |
36524950 |
gcctttcttcttcagcactaatgctccacttgttagcaacgtgaagagaatcaagcttgatatt |
36525013 |
T |
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