View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_1 (Length: 597)
Name: NF5788_low_1
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 2021072 - 2021646
Alignment:
| Q |
18 |
gattttactttgttacatgttcatgatgatggtttggattctccaatgtttcaagagaagcnnnnnnnntctacaagtacaaaacagtttacatgggtta |
117 |
Q |
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| T |
2021072 |
gattttactttgttacatgttcatgatgatggtttggattctccaatgtttcaagagaagcaaaaaaaatctacaagtacaaaacagtttacatgggtta |
2021171 |
T |
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| Q |
118 |
ttctccttaaacttcacaaacttctgacatgtttgacatggttgaccaatggtctcaaatcaactttttcattggtcaaaaagagagtttcattatctga |
217 |
Q |
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| T |
2021172 |
ttctccttaaacttcacaaacttctgacatgtttgacatggttgaccaatggtctcaaatcaactttttcattggtcaaaaagagagtttcattatctga |
2021271 |
T |
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| Q |
218 |
tattggtgatgaaaatcctaagaacacaacaaggttatatagattcatcaaagtgtttcttgtactttcaattgttgctttggttgttgaaatcattgct |
317 |
Q |
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| T |
2021272 |
tattggtgatgaaaatcctaagaacacaacaaggttatatagattcatcaaagtgtttcttgtactttcaattgttgctttggttgttgaaatcattgct |
2021371 |
T |
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| Q |
318 |
cattttaatcaatggaatttgcatgtgattcaaccttgggaagttaagaatcttttgcaatggttttatatggtttggatttcttttagagaagattatg |
417 |
Q |
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| T |
2021372 |
cattttaatcaatggaatttgcatgtgattcaaccttgggaagttaagaatcttttgcaatggttttatatggtttggatttcttttagagaagattatg |
2021471 |
T |
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| Q |
418 |
ttgctcctttggttttgtttgtgtccaaattttgtattgttttgttcttgattcaatctttggatcggcttgttctttgtcttggatgcttttggatcaa |
517 |
Q |
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| T |
2021472 |
ttgctcctttggttttgtttgtgtcaaaattttgtattgttttgttcttgattcaatctttggatcggcttgttctttgtcttggatgcttttggatcaa |
2021571 |
T |
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| Q |
518 |
ggttaagaagttgaagcctatgattgatgatgatgcttatgatgttgaggatcctttgagctttcctatgcttct |
592 |
Q |
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| T |
2021572 |
ggttaagaagttgaagcctatgattgatgatgatgcttatgatgttgaggatcctttgagctttcctatggttct |
2021646 |
T |
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