View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_10 (Length: 383)
Name: NF5788_low_10
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_10 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 31103116 - 31102927
Alignment:
| Q |
13 |
aatatgataaaatttaatttttagttgatttaattatatacaatcattgttgcatttatcctttaccattacaatagaagcatttacataataacacaat |
112 |
Q |
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| T |
31103116 |
aatatcataaaatttaatttttagttgatttaattatatacaatcattgttgcatttatcctttaccattacaatagaagcatttacataattatgcaat |
31103017 |
T |
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| Q |
113 |
cacttgtaatagcaaagaacaacacaacaataatcattataaaatagtcaaatcatggggacaacagcaacatgaaattgagtccccaac |
202 |
Q |
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| T |
31103016 |
cacttgtaatagcaaagaacaacacaacaataatcattataaaatagtcaaatcatggggacaacaacaatatgagattgagtccccaac |
31102927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 171 - 368
Target Start/End: Complemental strand, 31080762 - 31080568
Alignment:
| Q |
171 |
ggacaacagcaacatgaaattgagtccccaactgcgaattaataagttatatatactcttattttataggtaaacctccgtgcctgtttcagtacatact |
270 |
Q |
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| T |
31080762 |
ggacaacaataatatgagattgagtctccaactatgagttgataagttatatacactcttattttataggtaaaccttcgtgcatgttttaacacatact |
31080663 |
T |
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| Q |
271 |
cgatgtgggactagttgtggtatactacatgctctgaagagaaaaaccaaagttttcagtctaaactcatgcataaggttacaagaaaagaagaaact |
368 |
Q |
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| T |
31080662 |
ctatgtgggacttgttgtggtatactacatg-tttgaagag-aaaaccaaagttttaagtctaaactcatgtggtaggttacaag-aaagaagaaact |
31080568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 349
Target Start/End: Complemental strand, 31056913 - 31056712
Alignment:
| Q |
149 |
ttataaaatagtcaaatcatggggacaacagcaacatgaaattgagtc--cccaactgcgaattaataagttatatatactcttattttataggtaaacc |
246 |
Q |
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| T |
31056913 |
ttatataacagtcaaatcttggggacagcagcaatatgagattgggtgtgccaaactatgagttaatatttgatatacaatcttattttatatgtaaacc |
31056814 |
T |
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| Q |
247 |
tccgtgcctgtttcagtacatactcgatgtgggactagttgtggtatactacatgctctgaagagaaaaaccaaagttttcagtctaaactcatgcataa |
346 |
Q |
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| T |
31056813 |
ttcctgcctgttttaacacatactcgatgtgggacttgttgtggtatactacatgct-tgtagagaaaaatcaaagtttcgagtctaaactcatgcagaa |
31056715 |
T |
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| Q |
347 |
ggt |
349 |
Q |
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||| |
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| T |
31056714 |
ggt |
31056712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 31027177 - 31027095
Alignment:
| Q |
219 |
atatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggtatactacatg |
301 |
Q |
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| T |
31027177 |
atatacactcttattttataggtaaacctctgtgcctgttttaacacatactcgatgtgagactagttgtggtatactacatg |
31027095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 356
Target Start/End: Complemental strand, 31070099 - 31069938
Alignment:
| Q |
192 |
gagtccccaactgcgaattaataagttatatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggt |
291 |
Q |
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|||||||||||| || ||||| || ||||| |||||||||||||||||||| || || |||||| |||| |||||||||||||||| |||||| |
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| T |
31070099 |
gagtccccaactatgacttaattggtgatatacactcttattttataggtaaatctttctgactgttttgacacatcctcgatgtgggactagctgtggt |
31070000 |
T |
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| Q |
292 |
atactacatgctctgaagagaaaaaccaaagttttcagtctaaactcatgcataaggttacaaga |
356 |
Q |
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| T |
31069999 |
atactacatg-tcttaagagaataaccaaag-ttcaaatctaaactcatgca-aaggttacaaga |
31069938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 368
Target Start/End: Complemental strand, 31035593 - 31035439
Alignment:
| Q |
214 |
aagttatatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggtatactacatgctctgaagagaa |
313 |
Q |
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|||| ||||| |||||| ||||||||| |||||| | || |||||| | ||||||||||||||| ||| |||||||||||||||||| | ||||||||| |
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| T |
31035593 |
aagtgatatacactcttcttttataggaaaaccttcatgactgttttaacacatactcgatgtggaacttgttgtggtatactacatgtt-tgaagagaa |
31035495 |
T |
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| Q |
314 |
aaaccaaagttttcagtctaaactcatgc--ataaggttacaagaaaagaagaaact |
368 |
Q |
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|| || |||||| ||| ||||| |||| | |||||||||||| ||||||||||| |
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| T |
31035494 |
aa-cctaagtttcaagtttaaacaaatgcgcagaaggttacaagagaagaagaaact |
31035439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 31110602 - 31110481
Alignment:
| Q |
219 |
atatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggtatactacatgctctgaagagaaaaacc |
318 |
Q |
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||||| || |||||||||||||||||| | | | | ||||| | ||||||||||||||||| | ||||| || |||||||||| |||||||| |||||| |
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| T |
31110602 |
atatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgttgttgtttactacatgc-ctgaagag-aaaacc |
31110505 |
T |
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| Q |
319 |
aaagttttcagtctaaactcatgc |
342 |
Q |
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|||||| ||||||||||||||| |
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| T |
31110504 |
gaagtttcaagtctaaactcatgc |
31110481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 300
Target Start/End: Original strand, 31096226 - 31096378
Alignment:
| Q |
148 |
attataaaatagtcaaatcatggggacaacagcaacatgaaattgagtccccaactgcgaattaataagttatatatactcttattttataggtaaacct |
247 |
Q |
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|||||||||| |||||| | | ||||||||| | || | |||| |||||||||| | ||||||||| || || |||||||||||||| ||||| || |
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| T |
31096226 |
attataaaatggtcaaaactttgggacaacaaaagtattagattgggtccccaactatgtgttaataagtgatgtacactcttattttataagtaaaact |
31096325 |
T |
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| Q |
248 |
ccgtgcctgtttcagtacatactcgatgtgggactagttgtggtatactacat |
300 |
Q |
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|||||| ||| | ||||||||||||||||| ||||||||||| ||||| |
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| T |
31096326 |
tagtgcctattttaacgtatactcgatgtgggacttgttgtggtatattacat |
31096378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 31046018 - 31045955
Alignment:
| Q |
219 |
atatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggact |
282 |
Q |
| |
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||||| |||||||||||||||| ||| || | ||||||||| | ||||||||||||||||||| |
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| T |
31046018 |
atatacactcttattttatagggaaatcttcatgcctgttttaacacatactcgatgtgggact |
31045955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 368
Target Start/End: Original strand, 4962 - 5135
Alignment:
| Q |
194 |
gtccccaactgcgaattaataagttatatatactcttattttataggtaaacctccgtgcctgtttcagtacatactcgatgtgggactagttgtggta- |
292 |
Q |
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|||||||||| || ||||||||| ||||| ||||||||||||||| |||||||| |||||||||| | |||||| |||||||||| ||||||||| |
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| T |
4962 |
gtccccaactatgagttaataagtgatatacactcttattttatagataaacctcagtgcctgttttaacgtatactctatgtgggacttgttgtggtat |
5061 |
T |
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| Q |
293 |
tactacatgctctgaagagaaaaaccaaagttttcagtctaaactcatgcataaggttacaagaaaagaagaaact |
368 |
Q |
| |
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|||| ||| | || ||||| |||||||||||| |||||||||||||||| ||||||||| | ||||||||||| |
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| T |
5062 |
tactgcatac-cttaagag-aaaaccaaagttacaagtctaaactcatgcacaaggttacagtagaagaagaaact |
5135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 170642 - 170740
Alignment:
| Q |
149 |
ttataaaatagtcaaatcatggggacaacagcaacatgaaattgagtccccaactgcgaattaataagttatatatactcttattttataggtaaacct |
247 |
Q |
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|||||||| | |||||||||||| | |||| | |||| |||| |||||||||| | ||||||||| ||| | ||||||||||||||||||||||| |
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| T |
170642 |
ttataaaacaatcaaatcatgggaataacaaccgtatgagattgggtccccaactatgggttaataagtgatacacactcttattttataggtaaacct |
170740 |
T |
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