View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_11 (Length: 370)
Name: NF5788_low_11
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 32032613 - 32032384
Alignment:
| Q |
12 |
atgaactgagacagataaaaagtcggtaccaaagtagaagtagttctgacgccttgagacctgcagtttcaattagacgcgtaataaccctcatcacggg |
111 |
Q |
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| T |
32032613 |
atgaactgagacagataaaaagtcggtaccaaagtggaggtagttctgacgccttgagacctgcagtttcaattagacgcgtaataaccctcatcgcggg |
32032514 |
T |
|
| Q |
112 |
atgagtcaaatatgttagtaacatagacccctgagggttatcagaaccaaatgaagcagaccctttcgagtttatgaaaccgatcaccaaattatatgac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32032513 |
atgagtcaaatatgttagtaacatagacccctgagggttatcagaaccaaatgaagcagaccctttcgagtttatgaaaccgatcaccgaattatatgac |
32032414 |
T |
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| Q |
212 |
aaatctgcacccacccaatctttaagcaag |
241 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32032413 |
aaatctgcacccacccaatctttaagcaag |
32032384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 32032356 - 32032255
Alignment:
| Q |
269 |
tcatagcatgagaacaacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagagagataacgacaact |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32032356 |
tcatagcatgagaacaacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagagagataacgacaact |
32032257 |
T |
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| Q |
369 |
tt |
370 |
Q |
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|| |
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| T |
32032256 |
tt |
32032255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 32078824 - 32078762
Alignment:
| Q |
293 |
attgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagaga |
355 |
Q |
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|||||||||||| |||||||| || ||||||||||| ||||||||||||| |||| |||||| |
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| T |
32078824 |
attgcacacttcttaatttattgtacaaatattacatgtccttctccaagtagagaacagaga |
32078762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 32065503 - 32065427
Alignment:
| Q |
284 |
aacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagagagataa |
360 |
Q |
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||||||||||| |||||||| ||||||||| || |||||||| |||||||||| ||||||| || |||||||| |
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| T |
32065503 |
aacactttcataacacacttcttaatttatagtacccatattacaagtccttctccacgtggagaacaaagagataa |
32065427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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