View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_12 (Length: 344)
Name: NF5788_low_12
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 33135623 - 33135296
Alignment:
| Q |
3 |
atggttccatttctctttttgcattgagccaacccccaataacaactttaatcaacannnnnnnaagacttatcgagtttctttgatcnnnnnnngggca |
102 |
Q |
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| T |
33135623 |
atggttccatttctctttttgcattgatccaacccc-aataacaactttaatcaacatttttttaaggcttatcgagtttctttgatcaacaaaagggca |
33135525 |
T |
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| Q |
103 |
aaggaacaagggttagttttgtcaattgcaatttgtgattaagattgattaattatatggtaaggaagatggtgaagatgaatatgagaggtatccaaaa |
202 |
Q |
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| T |
33135524 |
aaggaacaagggttagttttgtcaattgcaatttgtgattaagattgattaattatatggtaaggaagatggtgaagatgaatatgagaggtatccaaaa |
33135425 |
T |
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| Q |
203 |
ttgtggtgaggtagctcctgctctcatcagaatccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttc |
302 |
Q |
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| T |
33135424 |
ttgtggtgaggtagctcctgctctcatcagaacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttc |
33135325 |
T |
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| Q |
303 |
caaattatgccaaagaggatgttgtttct |
331 |
Q |
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| T |
33135324 |
caaattatgccaaagaggatgttatttct |
33135296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 331
Target Start/End: Complemental strand, 39182455 - 39182274
Alignment:
| Q |
149 |
gattaattatatggtaaggaagatggtgaagatgaatatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaatccctaaaaaatgt |
248 |
Q |
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| T |
39182455 |
gattaagtatatgctaaggaagacggtgaagatggaaatgagaagcatccaaaatttccgcgaggtagcttttgctctcatcataa-ccctaaaaaatgt |
39182357 |
T |
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| Q |
249 |
tcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttccaaattatgccaaagaggatgttgtttct |
331 |
Q |
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| T |
39182356 |
tgttctaaatttccaaggttggagcctatcattgaagaaggatccgagagcttccatactatgccaaagaagatgttgtttct |
39182274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 176 - 331
Target Start/End: Complemental strand, 28457612 - 28457457
Alignment:
| Q |
176 |
gaagatgaatatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaatccctaaaaaatgttcttctaaatttccaaggttggagcct |
275 |
Q |
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| T |
28457612 |
gaagatggaaatgagaagcatccaaaattgccgtgaggtagcttctgctctcatcataacccctaaaaaatgttgttccaaatttccaaggttggagtct |
28457513 |
T |
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| Q |
276 |
atcattgaagaaggacctgagagcttccaaattatgccaaagaggatgttgtttct |
331 |
Q |
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| T |
28457512 |
atcattgaagaaggatccgagagcttccaaactatgccaaagaagatgttgtttct |
28457457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 110 - 331
Target Start/End: Complemental strand, 40029539 - 40029312
Alignment:
| Q |
110 |
aagggttagttttgtcaattgcaatttgtgattaagattgattaattatatggtaaggaagatggtgaag------atgaatatgagaggtatccaaaat |
203 |
Q |
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| T |
40029539 |
aagggttaatttggttaactacaacttgtgattaagattgattaattaaatgccaaggaagatggtgaaggttgaaatgagattgagaggcattcaaaat |
40029440 |
T |
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| Q |
204 |
tgtggtgaggtagctcctgctctcatcagaatccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttcc |
303 |
Q |
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| T |
40029439 |
tgtggtgaggtagctcctgctctgatcataacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacccaagagcttcc |
40029340 |
T |
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| Q |
304 |
aaattatgccaaagaggatgttgtttct |
331 |
Q |
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| T |
40029339 |
aaactatgccaaagagaatgttgtttct |
40029312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 32354402 - 32354570
Alignment:
| Q |
169 |
agatggtgaagatgaatatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaatccctaaaaaatg---ttcttctaaatttccaag |
265 |
Q |
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| T |
32354402 |
agatggtgaagatggaaatgaaaggcatccaaaattgtggtgaggttgcacctgctctcctcataacccctagaaaatgctcttcttctaaattttcaag |
32354501 |
T |
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| Q |
266 |
gttggagcctatcattgaagaaggacctgagagcttccaaat---tatgccaaagaggatgttgtttct |
331 |
Q |
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| T |
32354502 |
gttggaacctatcattgaagaaggagctgaaagtttacatattaatatgccaaagaagatgttgtttct |
32354570 |
T |
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