View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_13 (Length: 333)
Name: NF5788_low_13
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 127 - 333
Target Start/End: Original strand, 51666060 - 51666259
Alignment:
| Q |
127 |
atagcttattattattactagaactagaaatcagaagataaagaaataggaggaaatccttgataaaatgagaatgggtcttggaaggaagggtcaaggg |
226 |
Q |
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| T |
51666060 |
atagcttattattattactagaagtagaaatgagaagatgaagaaataggaggaaatccttgataaaatgagaatgggtcttggaaggaagg-------g |
51666152 |
T |
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| Q |
227 |
tcaaagtcaaatgagttgaagtcctcacaaggctgctgctgctctgctctagaaccaatgcccatacccttttaattacagtacaataatatcccatatc |
326 |
Q |
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| T |
51666153 |
tcaaagtcaaatgagttgaagtcctcacaaggctgctgctgctctgctctagaaccaatgcccatacccttttaattacagtacaataatatcccatatc |
51666252 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 51665654 - 51665714
Alignment:
| Q |
52 |
cacacacctgccattaattataatccgacgtgtcagttccagatcgatcaaatattaatta |
112 |
Q |
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| T |
51665654 |
cacacacctgccattaattataatccgacgtgtcagttccagatcgatcaaatattaatta |
51665714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 51665601 - 51665634
Alignment:
| Q |
10 |
catcatcatataagtcagttttccaatctcgtac |
43 |
Q |
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| T |
51665601 |
catcatcatataactcagttttccaatctcgtac |
51665634 |
T |
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