View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_14 (Length: 313)
Name: NF5788_low_14
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 3855564 - 3855266
Alignment:
| Q |
1 |
ctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttgccacatggcattctaacttattcacc |
100 |
Q |
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| T |
3855564 |
ctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttcccaggtcccattctaacttattcacc |
3855465 |
T |
|
| Q |
101 |
tcttgttgttttgaacttgaatgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgaca |
200 |
Q |
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| T |
3855464 |
tcttgttgttttgaacttgaatgggaatggggtcttaatgatataccatgttgataaatatcttactcatttgcccaaacttaaaaaactccacatgaca |
3855365 |
T |
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| Q |
201 |
aaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccacttctcgaggatttactcataaaaaatgtcagcacccatgatgat |
299 |
Q |
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| T |
3855364 |
aaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccatttctcgaggatttactcataaaaaatgtcagcacccatgatgat |
3855266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 299
Target Start/End: Original strand, 4141082 - 4141357
Alignment:
| Q |
24 |
catgtcgatctcacttttttgcagca---ctcttccactacccccatttgcttgccacatggcattctaacttattcacctcttgttgttttgaacttga |
120 |
Q |
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| T |
4141082 |
catgttgatttcacttttttgcagcagcactcttccgctaccccgatttacttgccaaataacattct---ttgttcaactcttgttgttttgaacttga |
4141178 |
T |
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| Q |
121 |
atgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagct |
220 |
Q |
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| T |
4141179 |
atgggaatggggtgttaacaatagactgtgtttatgaatcttatactaatctgcccaacctcgaaaaactccacatgacaaaggttcattttctaaagct |
4141278 |
T |
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| Q |
221 |
taaatatcttattaagattctctctgtatgtccacttctcgaggatttactcataaaaaatgtcagcacccatgatgat |
299 |
Q |
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| T |
4141279 |
taaatatcttattcagattctctctgtatgtccacttcttgaggatttgctcataaaaaatgtcaccaccaatgatgat |
4141357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 120 - 283
Target Start/End: Original strand, 1881932 - 1882095
Alignment:
| Q |
120 |
aatgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagc |
219 |
Q |
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||||||||||||||||||||||| || |||||||||| | ||||| |||||||| | ||||||||||||||| | |||| ||||| ||||| ||||| |
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| T |
1881932 |
aatgggaatggggtcttaactattgacaatgttcataactctcttactaatttgcccaacctcaaaaaactccacttcacaagggttcattttctaaagc |
1882031 |
T |
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| Q |
220 |
ttaaatatcttattaagattctctctgtatgtccacttctcgaggatttactcataaaaaatgt |
283 |
Q |
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| T |
1882032 |
ttcaatttcttattaagattctctctgtatgtccgcttcttgaggatttactcatcaaaaatgt |
1882095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 1881510 - 1881567
Alignment:
| Q |
18 |
gttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttgc |
75 |
Q |
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| T |
1881510 |
gttgaacatgtcaatctcacttttctgtagcattctcccactacccccatttacttgc |
1881567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 41541770 - 41541889
Alignment:
| Q |
164 |
tactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccacttctcgag |
263 |
Q |
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| T |
41541770 |
tactaatttgcccaacctcaaaaaactccacttcacaagggttcattttccaaagcttcaatttcttattaagattctctccgtatgtccgcttcttgag |
41541869 |
T |
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| Q |
264 |
gatttactcataaaaaatgt |
283 |
Q |
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||||||||||| |||||||| |
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| T |
41541870 |
gatttactcatcaaaaatgt |
41541889 |
T |
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