View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5788_low_16 (Length: 292)
Name: NF5788_low_16
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 2076976 - 2077240
Alignment:
| Q |
12 |
acagagaaagtacagcagcaccggatgtgaagaaatagtaaactggtattagcatggaggaagctgtttccatggcggaagtacagaagagatcgatgat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2076976 |
acagagaaagtacagcagcaccggatgtgaagaaatagtaaactggtattagcatggaggaagctgtttccatggcggaagtacagaagagatcgatgat |
2077075 |
T |
|
| Q |
112 |
gaaggctttgataacagaggtttgggtgatttgacggagttttgattggacgttgaccgtgtttgatttgatgaaatggaatgcggtggcggctctgctt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2077076 |
gaaggctttgataacagaggtttgggtgatttgacggagttttgattggacgttgacggtgtttgatttgatgaaatggaatgcggtggcggctctgctt |
2077175 |
T |
|
| Q |
212 |
tgggtggtggtgtggttaacggtgatggaagggagacggtggaagatgatggaagggtgggaagt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2077176 |
tgggtggtggtgtggttaacggtgatggaagggagacggtggaagatgatggaagggtgggaagt |
2077240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 2073870 - 2074133
Alignment:
| Q |
12 |
acagagaaagtacagcagcaccggatgtgaagaaatagtaaactggtattagcatggaggaagctgtttccatggcggaagtacagaagagatcgatgat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
2073870 |
acagagaaagtacagcagcaccggatgtgaagaaatagtaaacagggatttgcatggcggaagctgtttccatggcggaggtacaaaagaggtcgatgat |
2073969 |
T |
|
| Q |
112 |
gaaggctttgataacagaggtttgggtgatttgacggagttttgattggacgttgaccgtgtttgatttgatgaaatggaatgcggtggcggctctgctt |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| | || | |||||| | ||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
2073970 |
gaaggctttgataacagaggtttggatgatttgacggagtttggtttctatgttgacggcgtttgatttgatgaactgaaatgcggtggcggcgatgctt |
2074069 |
T |
|
| Q |
212 |
tgggtggtggtgtggttaacggtgatggaagggagacggtggaagatgatggaagggtgggaag |
275 |
Q |
| |
|
|| |||||||||||||| |||| || || |||||||||||||| |||| ||||| ||||||| |
|
|
| T |
2074070 |
tgagtggtggtgtggttgacggcgacggtggggagacggtggaacgtgattgaaggatgggaag |
2074133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 2069667 - 2069802
Alignment:
| Q |
23 |
acagcagcaccggatgtgaagaaatagtaaactggtattagcatggaggaagctgtttccatggcggaagtacagaagagatcgatgatgaaggctttga |
122 |
Q |
| |
|
|||||||| || || ||||||||||||||||| || ||| ||||| |||||| ||||||||| ||||| || || | |||||| ||||||| ||||| |
|
|
| T |
2069667 |
acagcagctccagaagtgaagaaatagtaaacagggattcccatggtggaagcaacttccatggcagaagtgcaaaacatatcgataatgaaggatttga |
2069766 |
T |
|
| Q |
123 |
taacagaggtttgggtgatttgacggagttttgatt |
158 |
Q |
| |
|
|||| |||||||| || || | ||||||||| |||| |
|
|
| T |
2069767 |
taacggaggtttgagtaatctcacggagtttggatt |
2069802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University