View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_17 (Length: 239)
Name: NF5788_low_17
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 11479688 - 11479485
Alignment:
| Q |
18 |
aacacaactactgcgattcacaaaacttgtgttgcaaggttcaacttcatactcaagctgtatatgtaacaaagaatatatgttaatcacacgaactagt |
117 |
Q |
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| T |
11479688 |
aacacaactactgcgattcacaaaacttgtgttgcaaggttcaacttcatactcaagctgtatatgtaacaaagaatatatgttaatcacacgaactagt |
11479589 |
T |
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| Q |
118 |
attatatatatttttctaataaaattgagattcaaatatgaatttaattactatgcataattaagagtgtaaaaacattttatgtacacatgtaatctaa |
217 |
Q |
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| T |
11479588 |
attatatatatttttctaataaaattgagattcaaatatgaatttaattactatgcataattaacagtgtaaaaacattttatgtacacatctaatctaa |
11479489 |
T |
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| Q |
218 |
tcat |
221 |
Q |
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|||| |
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| T |
11479488 |
tcat |
11479485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 11473510 - 11473350
Alignment:
| Q |
19 |
acacaactactgcgattcacaaaacttgtgttgcaaggttcaacttcatactcaagctgtatatgtaacaaagaatatatgttaatcacac--gaactag |
116 |
Q |
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||||||||||| ||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||| |||||| ||||||| |
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| T |
11473510 |
acacaactacttggattctcaaaacttgtgttgcaagtttcaacttcatattcaatctgtatatgtaacaaagaatttatgttactcacacatgaactag |
11473411 |
T |
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| Q |
117 |
tattatata--tatttttctaataaaattgagattcaaatatgaatttaattactatgcat |
175 |
Q |
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||||||||| | ||||||| | ||||||||||||||||| || |||||| | ||||||| |
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| T |
11473410 |
tattatatatttttttttcttgttaaattgagattcaaataggattttaataattatgcat |
11473350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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