View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_2 (Length: 591)
Name: NF5788_low_2
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 413 - 545
Target Start/End: Complemental strand, 23598620 - 23598489
Alignment:
| Q |
413 |
tgtttgaacgagtcaagagtacaaaaatacttacagtagcttcactttgtctctcttgaccaattaaccatcaaacatcattttaaaacatcactggact |
512 |
Q |
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| T |
23598620 |
tgtttgaacgagtca-gagtacaaaaatacttacagtagcttcactttgtctctcttgaccaattaaccatcaaacatcattttaaaacatcactggact |
23598522 |
T |
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| Q |
513 |
tgggtaacctgtttctcttcttatttttctacc |
545 |
Q |
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| T |
23598521 |
tgggtaacctgtttctcttcttatttttctacc |
23598489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 229 - 384
Target Start/End: Complemental strand, 23598864 - 23598709
Alignment:
| Q |
229 |
tgggaaaatgggaaaagaagcacaaaatggcaggnnnnnnnnttgagcttactgaatagaagtgtgtgaaacagatgggctgcagaaaagaccccttctc |
328 |
Q |
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| T |
23598864 |
tgggaaaatgggaaaagaagcaaaaaatggcaggaaagaaaattgagcttactgaatagaagagtgtgaaacagatgggctgcagaaaagaccccttctc |
23598765 |
T |
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| Q |
329 |
tacaatgggtcttgtttgtgtttgtatatagtcacaagttacctactcacaagtga |
384 |
Q |
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| T |
23598764 |
tacaatgggttttgtttgtgtttgtatatagtcacaagttacctactcacaagtga |
23598709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 23598963 - 23598863
Alignment:
| Q |
1 |
ttccaaccgagcaaattaccaattatatgttatgatccaagtcataaatacaaacccatatcattatcagttctcacaatcccaaacaaatatacgcaat |
100 |
Q |
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| T |
23598963 |
ttccaaccgagcaaattaccaattatatgttatgatccaagtcataaatacaaaccgatatcattatcagttctcacaatcccaaacaaatatacgtaat |
23598864 |
T |
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| Q |
101 |
g |
101 |
Q |
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| T |
23598863 |
g |
23598863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 24564353 - 24564294
Alignment:
| Q |
395 |
atttctaatgttgaaaattgtttgaacgagtcaagagtacaaaaatacttacagtagcttc |
455 |
Q |
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||||||| |||||||||||||||||| ||||| ||||||| |||||||||| ||||||||| |
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| T |
24564353 |
atttctagtgttgaaaattgtttgaatgagtc-agagtactaaaatacttatagtagcttc |
24564294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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