View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_4 (Length: 527)
Name: NF5788_low_4
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 32246562 - 32246055
Alignment:
| Q |
1 |
aattcaaattaaattattgagttgaatagtatttttgacattctataggcatgcattttgattagatcattttccaatttccatgaataccttttcttgt |
100 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246562 |
aattcaaatttaattattcagttgaatagtatttttgacattctataagcatgcattttgattagatcattttccaatttccatgaataccttttcttgt |
32246463 |
T |
|
| Q |
101 |
agaatccttatctctagttgcattttttgttgtccctatagtcagaatcagaagcatatatgatatatacatccctttttactattctttgatgtatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246462 |
agaatccttatctctagttgcattttttgttgtccctatagtcagaatcagaagcatatatgatatatacatccctttttactattctttgatgtatata |
32246363 |
T |
|
| Q |
201 |
ggaagcgttcactagcaaaattgcatccaaaatggaccatccttttatttttccttttaatagcatagaaaaataatgggtggacattgtgctttaagtg |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246362 |
ggaagcgttcactggcaaaattgcatccaaaatggaccatccttttatttttccttt-aatagcatagaaaaataatgggtggacattgtgctttaagtg |
32246264 |
T |
|
| Q |
301 |
atgaaatccactatttttaaaatttaaagggagactttatttcagaacattgggtcctgattaattgcgtacagcactacaatcattagaggatgaaaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
32246263 |
atgaaatccactatttttaaaatttaaagggagactttatttcagaacattgggtcctgattaattgcgtacagcactaaaatcattagaggacgaaaca |
32246164 |
T |
|
| Q |
401 |
aaattggttttatattaacacgtgaatgaaaggaaaataaatttgaaatgaatatatgaattttgaagcatacagatataattatttatcatagtgatca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32246163 |
aaattggttttatattaacacgtgaatgaaaggaaaataaatttgaaatgaatatatgaattttgaagcatacagatataattatttatcatagtgatca |
32246064 |
T |
|
| Q |
501 |
cgctgtaat |
509 |
Q |
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||||||||| |
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| T |
32246063 |
cgctgtaat |
32246055 |
T |
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