View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5788_low_6 (Length: 420)

Name: NF5788_low_6
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5788_low_6
NF5788_low_6
[»] chr8 (5 HSPs)
chr8 (3-227)||(14005756-14005975)
chr8 (261-405)||(14005609-14005750)
chr8 (126-203)||(13091118-13091195)
chr8 (126-195)||(1010737-1010806)
chr8 (145-195)||(24425533-24425583)
[»] chr4 (7 HSPs)
chr4 (74-203)||(37871937-37872063)
chr4 (87-203)||(48639414-48639530)
chr4 (87-201)||(43497995-43498106)
chr4 (87-200)||(36652984-36653096)
chr4 (137-195)||(18871014-18871072)
chr4 (87-200)||(9897800-9897910)
chr4 (145-210)||(23805186-23805251)
[»] chr6 (2 HSPs)
chr6 (74-203)||(12913538-12913665)
chr6 (87-203)||(8754212-8754328)
[»] chr3 (5 HSPs)
chr3 (87-203)||(17914403-17914516)
chr3 (87-203)||(15028770-15028886)
chr3 (159-206)||(25979638-25979685)
chr3 (161-198)||(10754972-10755009)
chr3 (158-206)||(8596163-8596211)
[»] chr1 (5 HSPs)
chr1 (74-203)||(34548051-34548178)
chr1 (156-203)||(31912917-31912964)
chr1 (47-105)||(5367290-5367349)
chr1 (131-195)||(15174584-15174648)
chr1 (131-195)||(50817257-50817321)
[»] chr7 (5 HSPs)
chr7 (87-203)||(38140928-38141042)
chr7 (137-203)||(17195273-17195339)
chr7 (145-203)||(19322911-19322969)
chr7 (120-203)||(41768913-41768996)
chr7 (126-198)||(19293419-19293491)
[»] chr5 (5 HSPs)
chr5 (87-203)||(26370236-26370350)
chr5 (74-198)||(27157173-27157297)
chr5 (159-198)||(16126846-16126885)
chr5 (262-325)||(43581349-43581412)
chr5 (80-195)||(36420434-36420546)
[»] scaffold0300 (1 HSPs)
scaffold0300 (126-201)||(8213-8288)
[»] scaffold0432 (1 HSPs)
scaffold0432 (145-202)||(7785-7842)
[»] chr2 (2 HSPs)
chr2 (137-195)||(45702531-45702589)
chr2 (158-206)||(36212502-36212550)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 14005975 - 14005756
Alignment:
Q  3 caccattttcccaacagggtcatattaaattccttcagccgcctaacc--------ccctttctccttattagaaaaacagtgttccaacttatccaaga 94  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||        |||||||||||||||||||||| |||||||||||||||||||||    
T  14005975 caccattttcccaacaggaccatattaaattccttcaaccgcctaacctccaaaccccctttctccttattagaaaaatagtgttccaacttatccaaga 14005876  T
Q  95 aattttcctaacttccccaccaccaccccggaaa---agaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaa 191  Q
    |||                || || |||||||||   | |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  14005875 aat----------------ccccccccccggaaataaaaaaaaagttaaataaagattcgatagaggaaatgatacttgtgagagctttgaagaaggaaa 14005792  T
Q  192 gaaaatagaccgaaaaagacagatttcagaagaatc 227  Q
    |||||||||| | |||||||||  |||| |||||||    
T  14005791 gaaaatagactggaaaagacaggcttcaaaagaatc 14005756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 405
Target Start/End: Complemental strand, 14005750 - 14005609
Alignment:
Q  261 gtaaaaaatggctatacgatacaaaataattttataaacatattacttgattacaactattttttaacacactttgnnnnnnnnnnnnngggttgtactt 360  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||             |||||||||||    
T  14005750 gtaaaaaatggctatacgatacaaaataattttataa---tattacttgattacaactattttttaacacactttgtttctttttttgtgggttgtactt 14005654  T
Q  361 gtacattgcaagtgaaatannnnnnnaatatttatttgaacatgt 405  Q
    |||||| | ||||||||||       |||||||||||||||||||    
T  14005653 gtacatcggaagtgaaatatttttttaatatttatttgaacatgt 14005609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 13091118 - 13091195
Alignment:
Q  126 aaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccg 203  Q
    |||| ||| |||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||| |||||||    
T  13091118 aaaaaaaacagttaaataaagattcaatagaagaaatgatacgtgcgagagctttgaagaaggaaagaaagtagaccg 13091195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 1010737 - 1010806
Alignment:
Q  126 aaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaa 195  Q
    |||| ||||| |||||||||||||||||| | ||||| ||| ||||| | || |||||||||||||||||    
T  1010737 aaaaaaaaaaattaaataaagattcgatagaagaaattatatttgcgggggccttgaagaaggaaagaaa 1010806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 24425533 - 24425583
Alignment:
Q  145 agattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaa 195  Q
    |||||||||| ||||||| |||| |||| |||| |||||||||||||||||    
T  24425533 agattcgatagaggaaattatacctgcgggagccttgaagaaggaaagaaa 24425583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 37871937 - 37872063
Alignment:
Q  74 agtgttccaacttatccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcga 173  Q
    |||| ||||| | |||||||||||||||||||| ||| ||| ||| ||||   ||| ||| |||||||||||||||| ||| | |||||||||| ||||     
T  37871937 agtgctccaattaatccaagaaattttcctaacctcctcacaaccccccc---aaaaaaacagttaaataaagattcaatagaagaaatgatacctgcgg 37872033  T
Q  174 gagctttgaagaaggaaagaaaatagaccg 203  Q
    |||||||||||||||||||||| |||||||    
T  37872034 gagctttgaagaaggaaagaaagtagaccg 37872063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 48639530 - 48639414
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| |||  || ||    |||| ||| | ||||| | |||||| ||| |||||||||||| |||| |||||||||||||    
T  48639530 atccaagaaattttcctaacctcctcacagccccctaaaaaaataaacaattaaaaatagattcaatagaggaaatgatacatgcgggagctttgaagaa 48639431  T
Q  187 ggaaagaaaatagaccg 203  Q
    ||||||||| |||||||    
T  48639430 ggaaagaaagtagaccg 48639414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 43498106 - 43497995
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| ||| ||| ||    |||| ||| | ||||||| |||||| ||  | ||||||||||  |||||||||||||||||    
T  43498106 atccaagaaattttcctaacctcctcacaaccccca---aaaaaaaacaattaaatatagattcaatggaagaaatgatacccgcgagagctttgaagaa 43498010  T
Q  187 ggaaagaaaatagac 201  Q
    ||||||||| |||||    
T  43498009 ggaaagaaagtagac 43497995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 36652984 - 36653096
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaa-agttaaataaagattcgatataggaaatgatacttgcgagagctttgaaga 185  Q
    |||||||||||||||||||| ||| ||| |  |||||  |||| |||| | ||||||| |||||| ||  | |||||||||| |||| ||||||||||||    
T  36652984 atccaagaaattttcctaacctcctcacaa--accccaaaaaaaaaaacaattaaatatagattcaatggaagaaatgatacatgcgggagctttgaaga 36653081  T
Q  186 aggaaagaaaataga 200  Q
    |||||||||| ||||    
T  36653082 aggaaagaaagtaga 36653096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 18871014 - 18871072
Alignment:
Q  137 ttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaa 195  Q
    |||||||||||||| ||| ||||||| ||||||| | |||| |||||||||||||||||    
T  18871014 ttaaataaagattcaatagaggaaattatacttgtgggagccttgaagaaggaaagaaa 18871072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 9897800 - 9897910
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| ||| |||  |||   ||| ||||| ||||||| |||||| ||  | |||||||||| |||   ||||||||||||    
T  9897800 atccaagaaattttcctaacctcctcacaacccaccc---aaaaaaaaaattaaatatagattcaatggaagaaatgatacctgcagaagctttgaagaa 9897896  T
Q  187 ggaaagaaaataga 200  Q
    ||||||||| ||||    
T  9897897 ggaaagaaagtaga 9897910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 23805251 - 23805186
Alignment:
Q  145 agattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccgaaaaaga 210  Q
    |||||| ||| | |||||||||| || |  ||| ||||||||||||||||||||||||| ||||||    
T  23805251 agattcaatagaagaaatgatacatgtggaagccttgaagaaggaaagaaaatagaccggaaaaga 23805186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 12913538 - 12913665
Alignment:
Q  74 agtgttccaacttatccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcga 173  Q
    |||| ||||| | |||||||||||||||||||| ||| ||| ||| | ||  |||| ||| |||||||||||||||| ||| | |||||||||| ||||     
T  12913538 agtgctccaattaatccaagaaattttcctaacctcctcacaaccccgcc--aaaaaaaacagttaaataaagattcaatagaagaaatgatacctgcgg 12913635  T
Q  174 gagctttgaagaaggaaagaaaatagaccg 203  Q
    |||||||||||||||||||||| |||||||    
T  12913636 gagctttgaagaaggaaagaaagtagaccg 12913665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 8754212 - 8754328
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| |||  || ||    |||| ||||| ||||| | |||||| ||| |||||||||||| |||| |||| ||||||||    
T  8754212 atccaagaaattttcctaacctcctcacagcccccaaaaaaaaaaaaaaattaaaaatagattcaatagaggaaatgatacctgcgggagccttgaagaa 8754311  T
Q  187 ggaaagaaaatagaccg 203  Q
     ||||||||||||||||    
T  8754312 agaaagaaaatagaccg 8754328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 17914403 - 17914516
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| ||| ||| |||   |||| ||| | ||||| | |||||| ||| |||||||||||| |||| |||||||||||||    
T  17914403 atccaagaaattttcctaacctcctcacaacccccc---aaaaaaaacaattaaaaatagattcaatagaggaaatgatacctgcgggagctttgaagaa 17914499  T
Q  187 ggaaagaaaatagaccg 203  Q
    |||||||||||||||||    
T  17914500 ggaaagaaaatagaccg 17914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 15028886 - 15028770
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| |||  || ||    |||| ||| | ||||| | |||||| ||| |||||||||||| |||| |||||||||||||    
T  15028886 atccaagaaattttcctaacctcctcacagccccctaaaaaaataaacaattaaaaatagattcaatagaggaaatgatacatgcgggagctttgaagaa 15028787  T
Q  187 ggaaagaaaatagaccg 203  Q
    ||||||||| |||||||    
T  15028786 ggaaagaaagtagaccg 15028770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 25979638 - 25979685
Alignment:
Q  159 aaatgatacttgcgagagctttgaagaaggaaagaaaatagaccgaaa 206  Q
    ||||||||| || |||||| ||||||||||||||||||||||| ||||    
T  25979638 aaatgatacatgagagagccttgaagaaggaaagaaaatagactgaaa 25979685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 10754972 - 10755009
Alignment:
Q  161 atgatacttgcgagagctttgaagaaggaaagaaaata 198  Q
    ||||||| || |||||||||||||||||||||||||||    
T  10754972 atgatacctgagagagctttgaagaaggaaagaaaata 10755009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 8596163 - 8596211
Alignment:
Q  158 gaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccgaaa 206  Q
    |||||||||| || ||||||||||||||| ||||| ||||| |||||||    
T  8596163 gaaatgatacatgagagagctttgaagaaagaaaggaaataaaccgaaa 8596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 34548178 - 34548051
Alignment:
Q  74 agtgttccaacttatccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcga 173  Q
    |||| ||||| | |||||||||||||||||||| ||| ||| |||  ||   |||| ||| |||||||||||||||| ||| | |||||||||| ||||     
T  34548178 agtgctccaattaatccaagaaattttcctaacctcctcacaacc--cctttaaaaaaaacagttaaataaagattcaatagaagaaatgatacctgcgg 34548081  T
Q  174 gagctttgaagaaggaaagaaaatagaccg 203  Q
    |||||||||||||||||||||| |||||||    
T  34548080 gagctttgaagaaggaaagaaagtagaccg 34548051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 31912917 - 31912964
Alignment:
Q  156 aggaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccg 203  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||    
T  31912917 aggaaatgatacttgcgggaactttgaagaaggaaagaaagtagaccg 31912964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 5367290 - 5367349
Alignment:
Q  47 aaccccctttctccttattagaa-aaacagtgttccaacttatccaagaaattttcctaa 105  Q
    |||| |||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||    
T  5367290 aacctcctttctccttattagaacaaacaatattccaatttatccaagagattttcctaa 5367349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 15174648 - 15174584
Alignment:
Q  131 aaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaa 195  Q
    ||||| |||||||||||||||||| | ||||| |||| || | | || |||||||||||||||||    
T  15174648 aaaaatttaaataaagattcgatagaagaaattatacctgtgggggccttgaagaaggaaagaaa 15174584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 50817321 - 50817257
Alignment:
Q  131 aaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaa 195  Q
    ||||| |||||||||||||||||  | ||||| |||| |||| | || |||||||||||||||||    
T  50817321 aaaaaattaaataaagattcgatggaagaaattatacctgcgggggccttgaagaaggaaagaaa 50817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 38141042 - 38140928
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| |||  || |||| ||||| | ||  ||||| | |||||| ||| |||||||||||| |||| |||||||||||||    
T  38141042 atccaagaaattttcctaacctcctcacatcccccccagaaaaaacaa--ttaaaaatagattcaatagaggaaatgatacctgcgggagctttgaagaa 38140945  T
Q  187 ggaaagaaaatagaccg 203  Q
    ||||||||| |||||||    
T  38140944 ggaaagaaagtagaccg 38140928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 17195273 - 17195339
Alignment:
Q  137 ttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccg 203  Q
    |||||||||||||| ||| | |||||||||| |||  |||||||||||||||||||||| |||||||    
T  17195273 ttaaataaagattcaatagaagaaatgatacctgcaggagctttgaagaaggaaagaaagtagaccg 17195339  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 19322969 - 19322911
Alignment:
Q  145 agattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccg 203  Q
    |||||| ||| |||||||||||| |||| |||||||||||||||||||||| |||||||    
T  19322969 agattcaatagaggaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccg 19322911  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 41768913 - 41768996
Alignment:
Q  120 ccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccg 203  Q
    ||||| |||||||| | ||||| | |||||| ||| |||||||||||| | || |||| |||||||| ||||||||||||||||    
T  41768913 ccccgcaaaagaaacaattaaaaatagattcaatagaggaaatgatacctacgggagcattgaagaatgaaagaaaatagaccg 41768996  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 19293491 - 19293419
Alignment:
Q  126 aaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaata 198  Q
    |||||||| | ||||| | |||||| ||| |||||||||||| || | || | ||||||||||||||||||||    
T  19293491 aaaagaaacaattaaaaatagattcaatacaggaaatgatacctgtgggacccttgaagaaggaaagaaaata 19293419  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 26370236 - 26370350
Alignment:
Q  87 atccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaa 186  Q
    |||||||||||||||||||| ||| ||| |||  ||   |||| ||| | ||||| | |||||| ||| || ||||||||| |||| |||||||||||||    
T  26370236 atccaagaaattttcctaacctcctcacaacc--ccaaaaaaaaaaacaattaaaaatagattcaatagagtaaatgatacctgcgggagctttgaagaa 26370333  T
Q  187 ggaaagaaaatagaccg 203  Q
    ||||||||| |||||||    
T  26370334 ggaaagaaagtagaccg 26370350  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 27157173 - 27157297
Alignment:
Q  74 agtgttccaacttatccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcga 173  Q
    ||||| |||| | |||||||  |||||||||||| || |||| | | |||  |||||||| | ||||| | |||||| ||| |||||||||||| ||| |    
T  27157173 agtgtcccaattaatccaagttattttcctaactgcctcacccctaacccccaaaagaaacaattaaaaatagattcaatagaggaaatgatacatgcaa 27157272  T
Q  174 gagctttgaagaaggaaagaaaata 198  Q
     ||| ||||||||||||||||||||    
T  27157273 aagccttgaagaaggaaagaaaata 27157297  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 16126846 - 16126885
Alignment:
Q  159 aaatgatacttgcgagagctttgaagaaggaaagaaaata 198  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  16126846 aaattatacatgcgagagctttgaagaaggaaagaaaata 16126885  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 43581349 - 43581412
Alignment:
Q  262 taaaaaatggctatacgatacaaaataattttataaacatattacttgattacaactatttttt 325  Q
    ||||||||| ||| || ||||||| || |||||||||||| |||||||||||  ||||||||||    
T  43581349 taaaaaatgactacacaatacaaagtatttttataaacattttacttgattatgactatttttt 43581412  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 36420434 - 36420546
Alignment:
Q  80 ccaacttatccaagaaattttcctaacttccccaccaccaccccggaaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctt 179  Q
    |||| ||||||||| ||||||||||   ||| |||| |||||||   ||| ||||| ||||| | |||||| ||| ||||||| |||| |||| | ||||    
T  36420434 ccaatttatccaagcaattttcctagagtcctcacccccacccc---aaaaaaaaaattaaaaatagattcaatagaggaaattatacctgcgggggctt 36420530  T
Q  180 tgaagaaggaaagaaa 195  Q
    |||| |||||||||||    
T  36420531 tgaaaaaggaaagaaa 36420546  T

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Target: scaffold0300 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 8288 - 8213
Alignment:
Q  126 aaaagaaaaagttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaatagac 201  Q
    |||| ||||| ||||||| |||||| ||  | |||||||||| ||||||||| ||||||||||||||||| |||||    
T  8288 aaaaaaaaaaattaaatatagattcaatggaagaaatgatacatgcgagagcgttgaagaaggaaagaaagtagac 8213  T

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Target: scaffold0432 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 7842 - 7785
Alignment:
Q  145 agattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaaatagacc 202  Q
    |||||| ||| |||||||||||| |||| ||||||||||||| |||||||| ||||||    
T  7842 agattcaatagaggaaatgatacatgcgggagctttgaagaaagaaagaaagtagacc 7785  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 45702531 - 45702589
Alignment:
Q  137 ttaaataaagattcgatataggaaatgatacttgcgagagctttgaagaaggaaagaaa 195  Q
    |||||||||||||||||| ||||||| |||| ||   |||| |||||||||||||||||    
T  45702531 ttaaataaagattcgatagaggaaattatacctgtaggagccttgaagaaggaaagaaa 45702589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 36212550 - 36212502
Alignment:
Q  158 gaaatgatacttgcgagagctttgaagaaggaaagaaaatagaccgaaa 206  Q
    |||||||||| | ||||||| |||||||| ||||||||||||| |||||    
T  36212550 gaaatgatacatacgagagccttgaagaaagaaagaaaatagatcgaaa 36212502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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